Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7139

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968699 to 969330 15506 mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969483 to 971578 15507 mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971914 to 976417 15508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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968,602 - -0.5
968,623 - -3.1
968,650 + -1.4
968,654 - -2.7
969,353 - -2.2
969,376 - -0.6
969,501 - -0.1
969,508 - -0.7
969,520 + -0.9
969,621 + -2.9
969,964 + 15507 mRNA_7139 0.23 1.0
969,995 + 15507 mRNA_7139 0.24 -1.4
970,005 - 15507 mRNA_7139 0.25 -0.3
970,239 + 15507 mRNA_7139 0.36 -1.8
970,277 + 15507 mRNA_7139 0.38 -0.8
970,675 - 15507 mRNA_7139 0.57 -0.8
970,860 + 15507 mRNA_7139 0.66 -1.6
971,029 - 15507 mRNA_7139 0.74 -2.8
971,125 - 15507 mRNA_7139 0.78 0.3
971,131 - 15507 mRNA_7139 0.79 -2.8
971,269 + 15507 mRNA_7139 0.85 -0.4
971,288 - 15507 mRNA_7139 0.86 0.5
971,397 - -2.2
971,405 + -1.7
971,434 + -2.1
971,440 + -0.5
971,492 + -0.7
971,741 + -1.8
971,748 + -1.4
971,992 + -0.7
972,013 - -3.3
972,166 + -0.6
972,189 + -3.9
972,515 - 15508 mRNA_7140 0.13 -1.1