Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7129

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944172 to 945488 15496 mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945655 to 947671 15497 mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948006 to 949396 15498

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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945,527 + -1.0
945,533 - -0.7
945,555 - -1.7
945,564 + 0.4
945,567 + -2.0
945,570 + -0.7
945,661 - -1.0
946,137 + 15497 mRNA_7129 0.24 -2.8
946,570 + 15497 mRNA_7129 0.45 0.0
946,689 + 15497 mRNA_7129 0.51 -1.5
946,844 - 15497 mRNA_7129 0.59 -1.7
946,972 + 15497 mRNA_7129 0.65 1.2
947,120 - 15497 mRNA_7129 0.73 -0.5
947,265 - 15497 mRNA_7129 0.80 -1.3
947,421 - 15497 mRNA_7129 0.88 -0.9
947,429 + 15497 mRNA_7129 0.88 0.3
947,440 + 15497 mRNA_7129 0.88 -3.6
947,537 - -0.4
947,576 - -1.4
947,595 - -2.0
947,722 - -1.3
947,871 - -1.1
947,879 - -0.1
947,882 + -2.6
947,977 - -1.1
948,002 - -0.6
948,009 - 0.2
948,009 - -2.6
948,014 - -3.1
948,017 - -0.3
948,018 - 0.2
948,024 + -1.8
948,163 + 15498 mRNA_7130 0.11 -1.2
948,167 + 15498 mRNA_7130 0.12 -1.0
948,468 - 15498 mRNA_7130 0.33 -0.9