Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7091

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7090: 15458 - Hypothetical Protein, at 857959 to 859367 15458 mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859673 to 862971 15459 mRNA_7092: 15460 - KOG2545 Conserved membrane protein, at 863308 to 866540 15460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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858,866 - 15458 mRNA_7090 0.64 -1.0
859,728 - 0.2
859,861 + -0.5
859,871 - -0.3
859,889 + -0.5
859,889 - -0.8
859,897 + -2.2
859,897 + -1.5
860,041 + 15459 mRNA_7091 0.11 -1.6
860,062 - 15459 mRNA_7091 0.12 0.7
860,062 + 15459 mRNA_7091 0.12 0.3
860,070 + 15459 mRNA_7091 0.12 -0.9
860,073 - 15459 mRNA_7091 0.12 -0.5
860,077 + 15459 mRNA_7091 0.12 -0.6
860,077 + 15459 mRNA_7091 0.12 0.1
860,191 - 15459 mRNA_7091 0.16 -3.0
860,206 + 15459 mRNA_7091 0.16 -2.0
860,216 - 15459 mRNA_7091 0.16 -0.4
860,224 + 15459 mRNA_7091 0.17 -3.3
860,370 + 15459 mRNA_7091 0.21 0.7
860,393 + 15459 mRNA_7091 0.22 -0.7
860,403 + 15459 mRNA_7091 0.22 -0.6
860,521 + 15459 mRNA_7091 0.26 -3.1
860,543 + 15459 mRNA_7091 0.26 -0.9
860,839 - 15459 mRNA_7091 0.35 -1.8
861,207 + 15459 mRNA_7091 0.46 -2.2
861,261 + 15459 mRNA_7091 0.48 -1.1
861,351 + 15459 mRNA_7091 0.51 -0.8
861,587 - 15459 mRNA_7091 0.58 -2.5
861,588 + 15459 mRNA_7091 0.58 -0.5
861,603 + 15459 mRNA_7091 0.59 -1.2
861,712 + 15459 mRNA_7091 0.62 0.6
861,903 + 15459 mRNA_7091 0.68 0.8
861,947 + 15459 mRNA_7091 0.69 -2.6
861,960 - 15459 mRNA_7091 0.69 -0.5
862,154 + 15459 mRNA_7091 0.75 -2.1
862,209 + 15459 mRNA_7091 0.77 -0.9
862,356 - 15459 mRNA_7091 0.81 -2.0
862,787 + -3.6
862,813 - -2.3
862,831 - -1.6
862,848 - -1.2
862,975 + -1.8
863,009 + -1.6
863,175 - -0.1