Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7056

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7055: 15423 - K03841 FBP, fbp fructose-1,6-bisphosphatase I, at 774217 to 775850 15423 mRNA_7056: 15424 - K01557 FAHD1 acylpyruvate hydrolase, at 776372 to 777538 15424 mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777852 to 778935 15425

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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775,416 - 15423 mRNA_7055 0.73 -1.8
775,446 + 15423 mRNA_7055 0.75 -0.2
775,575 - 15423 mRNA_7055 0.83 -1.7
775,636 + 15423 mRNA_7055 0.87 -1.1
775,704 + -2.2
775,708 - -1.7
775,726 + -1.2
775,734 - -2.3
775,738 - 1.2
775,739 + -0.0
775,739 - -1.4
775,740 + -3.1
775,746 + -1.9
775,749 + -1.5
775,846 - -2.1
775,861 + -2.0
775,903 - -0.6
776,013 - -2.5
776,026 - -0.9
776,028 - 0.7
776,032 + -2.3
776,034 - -4.0
776,043 - -0.8
776,043 + -1.1
776,047 - -1.0
776,050 - -0.5
776,051 - -3.9
776,053 - -0.3
776,057 + 2.2
776,058 + -0.5
776,062 - -1.0
776,064 - -1.9
776,077 + -0.5
776,124 - -1.1
776,125 - -3.5
776,132 - 0.8
776,132 - -2.6
776,147 + 0.3
776,149 - -0.6
776,168 + -1.6
776,179 - -1.5
776,208 + -2.4
776,298 - -0.4
776,305 + 0.6
776,307 + 0.2
776,324 - -1.8
776,442 + -2.6
776,445 - 0.6
776,763 + 15424 mRNA_7056 0.34 -2.8
777,042 + 15424 mRNA_7056 0.57 -2.0
777,050 - 15424 mRNA_7056 0.58 -2.3
777,196 + 15424 mRNA_7056 0.71 -0.8
777,311 - 15424 mRNA_7056 0.80 -0.2
777,608 + -1.4
777,610 + -2.1
777,661 + -2.7
777,769 - -0.4
777,795 + -2.2
777,889 - -0.7
777,918 - 0.3
777,923 + -2.6
778,028 - 15425 mRNA_7057 0.16 0.3
778,039 - 15425 mRNA_7057 0.17 -0.4
778,059 - 15425 mRNA_7057 0.19 -1.0
778,068 - 15425 mRNA_7057 0.20 0.5
778,368 - 15425 mRNA_7057 0.48 -0.3
778,393 + 15425 mRNA_7057 0.50 -3.0