Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7008

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375 mRNA_7008: 15376 - Hypothetical Protein, at 661061 to 661645 15376 mRNA_7009: 15377 - Hypothetical Protein, at 661814 to 663427 15377

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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660,132 + 15375 mRNA_7007 0.30 -2.0
660,310 + 15375 mRNA_7007 0.52 -3.6
660,416 - 15375 mRNA_7007 0.66 -3.7
660,459 - 15375 mRNA_7007 0.71 0.0
660,591 + 15375 mRNA_7007 0.87 -1.0
660,613 - -1.0
660,631 + -0.2
660,728 - -1.0
660,729 - -1.0
660,736 - -0.3
660,741 - -1.3
660,741 - -0.2
660,743 - -2.6
660,752 - 0.4
660,753 - -0.4
660,757 + -0.4
660,757 + 0.7
660,758 - -1.6
660,764 - -1.0
660,765 - -1.0
660,773 + -0.4
660,780 - -2.3
660,783 - -1.1
660,785 + -1.4
660,789 - -2.1
660,804 + -1.7
660,808 - -1.2
660,814 + -0.9
660,824 - -1.8
660,829 + -1.6
660,835 + -0.6
660,842 - 0.8
660,843 + -2.2
660,847 + -2.9
660,851 + 0.7
660,910 + -1.3
660,919 - -2.6
660,923 - -2.1
660,936 + 0.5
660,949 + -3.1
660,960 + -0.3
660,982 + -0.9
661,131 - 15376 mRNA_7008 0.12 -3.2
661,280 + 15376 mRNA_7008 0.37 -2.7
661,283 + 15376 mRNA_7008 0.38 -0.7
661,285 - 15376 mRNA_7008 0.38 -0.9
661,304 - 15376 mRNA_7008 0.42 -1.0
661,381 - 15376 mRNA_7008 0.55 -1.1
661,500 + 15376 mRNA_7008 0.75 -3.1
661,622 + 1.6
661,647 + -1.9
661,716 + -1.1
661,739 - -2.5
661,763 + -2.9
661,769 + -1.3
661,773 - 0.4
661,776 + -0.7
661,784 + -1.0
661,789 + -0.3
661,797 - -1.1
661,846 - -1.5
661,853 - -1.9
661,893 - -1.1
661,914 - -3.0
661,927 - -2.0
661,940 - 0.4
662,181 + 15377 mRNA_7009 0.23 -2.3
662,210 - 15377 mRNA_7009 0.25 -2.1
662,212 - 15377 mRNA_7009 0.25 -2.4
662,339 - 15377 mRNA_7009 0.33 -3.1
662,349 - 15377 mRNA_7009 0.33 -1.4