Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7007

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375 mRNA_7008: 15376 - Hypothetical Protein, at 661061 to 661645 15376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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658,925 - -3.2
658,937 - 0.3
658,939 + -0.4
659,067 - -0.2
659,079 + -0.8
659,234 + -0.1
659,235 - 2.2
659,374 - -0.4
659,388 - -2.6
659,493 + -0.9
659,506 - -2.3
659,519 - -2.5
659,534 + -0.5
659,539 - -2.1
659,540 + 0.1
659,548 + -3.1
659,564 - -1.1
659,579 - -0.7
659,579 - -0.5
659,584 + -3.3
659,709 - -0.4
659,736 - -1.1
659,841 + -1.5
659,857 + -0.9
660,001 - 15375 mRNA_7007 0.14 -1.6
660,132 + 15375 mRNA_7007 0.30 -2.0
660,310 + 15375 mRNA_7007 0.52 -3.6
660,416 - 15375 mRNA_7007 0.66 -3.7
660,459 - 15375 mRNA_7007 0.71 0.0
660,591 + 15375 mRNA_7007 0.87 -1.0
660,613 - -1.0
660,631 + -0.2
660,728 - -1.0
660,729 - -1.0
660,736 - -0.3
660,741 - -1.3
660,741 - -0.2
660,743 - -2.6
660,752 - 0.4
660,753 - -0.4
660,757 + -0.4
660,757 + 0.7
660,758 - -1.6
660,764 - -1.0
660,765 - -1.0
660,773 + -0.4
660,780 - -2.3
660,783 - -1.1
660,785 + -1.4
660,789 - -2.1
660,804 + -1.7
660,808 - -1.2
660,814 + -0.9
660,824 - -1.8
660,829 + -1.6
660,835 + -0.6
660,842 - 0.8
660,843 + -2.2
660,847 + -2.9
660,851 + 0.7
660,910 + -1.3
660,919 - -2.6
660,923 - -2.1
660,936 + 0.5
660,949 + -3.1
660,960 + -0.3
660,982 + -0.9
661,131 - 15376 mRNA_7008 0.12 -3.2
661,280 + 15376 mRNA_7008 0.37 -2.7
661,283 + 15376 mRNA_7008 0.38 -0.7
661,285 - 15376 mRNA_7008 0.38 -0.9
661,304 - 15376 mRNA_7008 0.42 -1.0
661,381 - 15376 mRNA_7008 0.55 -1.1
661,500 + 15376 mRNA_7008 0.75 -3.1
661,622 + 1.6
661,647 + -1.9