Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7005

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650077 to 652863 15372 mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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652,395 - 15372 mRNA_7004 0.83 0.2
652,562 + 15372 mRNA_7004 0.89 -2.6
652,819 - -1.0
652,835 - 0.3
652,838 - -1.6
652,855 + -0.7
652,992 - -0.6
653,150 + -1.0
653,269 - 15373 mRNA_7005 0.21 -1.5
653,270 - 15373 mRNA_7005 0.21 -1.1
653,274 - 15373 mRNA_7005 0.22 -1.0
653,278 + 15373 mRNA_7005 0.22 -2.6
653,286 + 15373 mRNA_7005 0.23 -0.9
653,288 - 15373 mRNA_7005 0.23 -2.1
653,294 + 15373 mRNA_7005 0.24 -2.2
653,410 - 15373 mRNA_7005 0.37 -1.6
653,864 - 15373 mRNA_7005 0.87 -1.6
653,977 + -0.1
654,148 - -0.9
654,166 - -0.4
654,255 - -1.2
654,322 + -2.0
654,410 + -0.8
654,598 - -0.7
654,598 + -3.1