Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7004

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647498 to 649944 15371 mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650077 to 652863 15372 mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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649,748 - -1.5
649,752 + 0.8
649,865 - 1.1
649,892 + -0.2
649,905 + -0.6
650,016 + -1.8
650,048 + -4.3
650,156 - -0.9
650,173 + -0.4
650,177 + -0.4
650,335 - -1.8
650,348 + -0.6
650,357 - 15372 mRNA_7004 0.10 -0.7
650,365 - 15372 mRNA_7004 0.10 -0.1
650,492 - 15372 mRNA_7004 0.15 -3.8
650,494 + 15372 mRNA_7004 0.15 -0.8
650,624 - 15372 mRNA_7004 0.20 -0.9
651,017 + 15372 mRNA_7004 0.34 -0.9
651,245 + 15372 mRNA_7004 0.42 -1.3
651,668 - 15372 mRNA_7004 0.57 0.9
651,829 - 15372 mRNA_7004 0.63 -1.3
651,893 + 15372 mRNA_7004 0.65 0.2
651,933 + 15372 mRNA_7004 0.67 -1.8
651,982 - 15372 mRNA_7004 0.68 -2.6
652,395 - 15372 mRNA_7004 0.83 0.2
652,562 + 15372 mRNA_7004 0.89 -2.6
652,819 - -1.0
652,835 - 0.3
652,838 - -1.6
652,855 + -0.7
652,992 - -0.6
653,150 + -1.0
653,269 - 15373 mRNA_7005 0.21 -1.5
653,270 - 15373 mRNA_7005 0.21 -1.1
653,274 - 15373 mRNA_7005 0.22 -1.0
653,278 + 15373 mRNA_7005 0.22 -2.6
653,286 + 15373 mRNA_7005 0.23 -0.9
653,288 - 15373 mRNA_7005 0.23 -2.1
653,294 + 15373 mRNA_7005 0.24 -2.2
653,410 - 15373 mRNA_7005 0.37 -1.6