Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7001

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638366 to 642076 15368 mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642201 to 644311 15369 mRNA_7002: 15370 - Hypothetical Protein, at 644510 to 646069 15370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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641,326 + 15368 mRNA_7000 0.80 0.5
641,781 + -3.1
642,010 - -1.1
642,081 + -1.3
642,641 - 15369 mRNA_7001 0.21 -0.1
643,024 - 15369 mRNA_7001 0.39 -1.0
643,231 + 15369 mRNA_7001 0.49 -0.9
643,236 + 15369 mRNA_7001 0.49 -4.8
643,237 + 15369 mRNA_7001 0.49 -2.5
643,479 - 15369 mRNA_7001 0.61 0.0
643,799 - 15369 mRNA_7001 0.76 0.6
643,910 - 15369 mRNA_7001 0.81 -2.8
643,983 - 15369 mRNA_7001 0.84 -0.1
644,102 - 0.4
644,227 - -1.1
644,399 + -3.2
644,516 - -0.6
644,549 - -1.3
644,686 - 15370 mRNA_7002 0.11 -1.7
644,689 + 15370 mRNA_7002 0.11 -1.1
644,695 - 15370 mRNA_7002 0.12 -2.7
644,699 - 15370 mRNA_7002 0.12 -1.4
644,700 + 15370 mRNA_7002 0.12 -0.9
644,704 + 15370 mRNA_7002 0.12 -0.8
644,706 + 15370 mRNA_7002 0.13 -2.0
644,714 - 15370 mRNA_7002 0.13 -1.8
644,718 + 15370 mRNA_7002 0.13 -2.9
644,722 + 15370 mRNA_7002 0.14 -2.3
644,840 - 15370 mRNA_7002 0.21 0.6
644,848 - 15370 mRNA_7002 0.22 -2.3
644,869 - 15370 mRNA_7002 0.23 -2.4
644,873 - 15370 mRNA_7002 0.23 -0.7
644,972 + 15370 mRNA_7002 0.30 -0.7
644,994 - 15370 mRNA_7002 0.31 -3.9
645,013 + 15370 mRNA_7002 0.32 -3.4
645,019 + 15370 mRNA_7002 0.33 -0.8
645,026 + 15370 mRNA_7002 0.33 -3.0
645,164 + 15370 mRNA_7002 0.42 -1.4