Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7000

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367 mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638366 to 642076 15368 mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642201 to 644311 15369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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637,376 + 15367 mRNA_6999 0.74 -2.8
637,491 - 15367 mRNA_6999 0.82 -1.4
637,508 - 15367 mRNA_6999 0.83 -0.5
637,657 - -3.0
637,678 - -0.9
637,780 - 0.7
637,847 + -3.2
637,981 + -0.4
637,987 - -0.4
637,988 + -1.6
637,996 - -2.2
637,999 + -0.9
638,000 + -2.5
638,279 + -2.2
638,287 + -3.0
638,426 + -1.8
638,564 + -1.2
638,584 - -1.6
638,590 + -0.4
638,996 - 15368 mRNA_7000 0.17 -1.2
638,999 - 15368 mRNA_7000 0.17 -2.7
639,020 - 15368 mRNA_7000 0.18 -1.8
639,276 + 15368 mRNA_7000 0.25 -0.7
639,451 - 15368 mRNA_7000 0.29 -1.2
639,562 - 15368 mRNA_7000 0.32 -1.3
639,736 + 15368 mRNA_7000 0.37 -0.8
639,771 + 15368 mRNA_7000 0.38 -1.6
640,032 + 15368 mRNA_7000 0.45 -1.0
640,259 - 15368 mRNA_7000 0.51 -1.0
640,575 + 15368 mRNA_7000 0.60 -0.7
640,964 - 15368 mRNA_7000 0.70 0.1
641,072 + 15368 mRNA_7000 0.73 -1.5
641,326 + 15368 mRNA_7000 0.80 0.5
641,781 + -3.1
642,010 - -1.1
642,081 + -1.3
642,641 - 15369 mRNA_7001 0.21 -0.1
643,024 - 15369 mRNA_7001 0.39 -1.0