Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6999

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632241 to 635924 15366 mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367 mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638366 to 642076 15368

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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635,409 + 15366 mRNA_6998 0.86 -2.2
635,607 - -0.3
636,042 - 0.4
636,058 + -1.0
636,066 + -0.9
636,162 - -0.4
636,191 + -0.4
636,301 - -0.2
636,403 + -2.5
636,505 - 15367 mRNA_6999 0.16 -2.1
636,511 - 15367 mRNA_6999 0.16 -1.1
636,813 + 15367 mRNA_6999 0.37 -1.7
636,930 - 15367 mRNA_6999 0.44 -3.3
636,932 - 15367 mRNA_6999 0.45 -0.2
637,239 + 15367 mRNA_6999 0.65 -2.0
637,239 + 15367 mRNA_6999 0.65 -1.8
637,243 + 15367 mRNA_6999 0.65 -2.7
637,376 + 15367 mRNA_6999 0.74 -2.8
637,491 - 15367 mRNA_6999 0.82 -1.4
637,508 - 15367 mRNA_6999 0.83 -0.5
637,657 - -3.0
637,678 - -0.9
637,780 - 0.7
637,847 + -3.2
637,981 + -0.4
637,987 - -0.4
637,988 + -1.6
637,996 - -2.2
637,999 + -0.9
638,000 + -2.5
638,279 + -2.2
638,287 + -3.0
638,426 + -1.8
638,564 + -1.2
638,584 - -1.6
638,590 + -0.4