Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6998

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6997: 15365 - K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase, at 630254 to 632002 15365 mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632241 to 635924 15366 mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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631,313 - 15365 mRNA_6997 0.61 -0.9
631,347 - 15365 mRNA_6997 0.62 -1.6
631,478 - 15365 mRNA_6997 0.70 0.5
631,606 + 15365 mRNA_6997 0.77 0.3
631,628 + 15365 mRNA_6997 0.79 -1.1
631,762 - 15365 mRNA_6997 0.86 -1.7
631,897 + -3.6
632,045 + -0.2
632,046 - -2.3
632,046 - -2.6
632,057 + -1.2
632,058 + -0.8
632,060 + 0.5
632,073 - -1.8
632,076 + -3.1
632,215 + -0.1
632,218 - -2.7
632,230 - -1.9
632,238 + -0.8
632,365 + -3.2
632,372 + -2.7
632,378 + -1.9
632,381 - -2.5
632,389 + -1.6
633,564 + 15366 mRNA_6998 0.36 -1.3
633,590 + 15366 mRNA_6998 0.37 -2.3
633,859 - 15366 mRNA_6998 0.44 -3.1
634,259 - 15366 mRNA_6998 0.55 -2.0
634,440 + 15366 mRNA_6998 0.60 -2.8
634,472 - 15366 mRNA_6998 0.61 -0.3
634,760 - 15366 mRNA_6998 0.68 -0.1
635,188 + 15366 mRNA_6998 0.80 -3.8
635,197 + 15366 mRNA_6998 0.80 1.1
635,409 + 15366 mRNA_6998 0.86 -2.2
635,607 - -0.3
636,042 - 0.4
636,058 + -1.0
636,066 + -0.9
636,162 - -0.4
636,191 + -0.4
636,301 - -0.2
636,403 + -2.5
636,505 - 15367 mRNA_6999 0.16 -2.1
636,511 - 15367 mRNA_6999 0.16 -1.1
636,813 + 15367 mRNA_6999 0.37 -1.7