Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6991

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615563 to 617347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573 15360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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617,141 + 15358 mRNA_6990 0.88 -3.3
617,427 + 0.6
617,499 + -3.4
617,501 - -2.3
617,516 - -0.9
617,536 - -2.9
617,542 + -2.6
617,560 - -0.2
617,567 - 0.1
617,570 - -3.7
617,575 + -1.2
617,576 - 0.7
617,577 - -1.7
617,581 - -0.8
617,582 + -3.5
617,583 + -0.2
617,584 + -1.2
617,590 - -2.7
617,595 + -3.5
617,603 - -0.8
617,610 - -1.8
617,676 - -1.8
617,689 - -1.0
617,694 + -1.7
617,853 - -1.8
618,121 + -1.5
618,140 - -0.1
618,156 - -2.8
618,169 + -0.8
618,309 - 15359 mRNA_6991 0.15 -0.6
618,313 + 15359 mRNA_6991 0.15 0.7
618,475 + 15359 mRNA_6991 0.23 -4.1
618,732 - 15359 mRNA_6991 0.36 1.6
619,045 + 15359 mRNA_6991 0.51 -3.2
619,575 + 15359 mRNA_6991 0.76 -1.3
619,923 - -1.8
619,928 + -0.3
620,080 - -0.9
620,085 + 0.2
620,106 - -1.6
620,115 + -1.8
620,494 - -0.7
620,513 - -0.5
620,523 - -2.5
620,541 + -2.7
620,633 + -0.8
620,653 - 15360 mRNA_6992 0.10 0.1
620,664 - 15360 mRNA_6992 0.11 -1.9
620,676 + 15360 mRNA_6992 0.11 -0.4