Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6985

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599695 to 602665 15352 mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602865 to 604394 15353 mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604534 to 605830 15354

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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601,963 + 15352 mRNA_6984 0.76 -1.3
601,968 - 15352 mRNA_6984 0.77 -0.8
602,072 - 15352 mRNA_6984 0.80 -1.1
602,394 - -1.4
602,499 - -1.8
602,531 - -3.7
602,673 - -0.7
602,674 - -1.0
602,680 + -0.6
602,694 - -0.7
602,694 - -1.6
602,715 - 0.9
602,715 - -0.5
602,716 + -2.9
602,717 - 0.7
602,733 + -0.7
602,750 - -1.1
602,801 - -1.6
602,828 - -2.1
602,857 + -0.6
603,083 + 15353 mRNA_6985 0.14 -2.4
603,264 - 15353 mRNA_6985 0.26 -0.2
603,271 - 15353 mRNA_6985 0.27 -0.3
603,374 + 15353 mRNA_6985 0.33 -1.4
603,421 + 15353 mRNA_6985 0.36 -2.4
603,424 + 15353 mRNA_6985 0.37 -1.1
603,588 - 15353 mRNA_6985 0.47 -1.3
603,591 - 15353 mRNA_6985 0.47 -1.9
603,668 - 15353 mRNA_6985 0.52 -1.2
603,677 - 15353 mRNA_6985 0.53 -2.8
603,699 - 15353 mRNA_6985 0.55 -0.5
603,974 - 15353 mRNA_6985 0.72 -1.4
603,992 - 15353 mRNA_6985 0.74 -3.0
604,129 - 15353 mRNA_6985 0.83 -0.5
604,295 - -0.6
604,300 - 0.1
604,300 - -4.5
604,449 - -0.8
604,454 - -1.5
604,455 + -0.8
604,484 + -1.5
604,589 - 0.4