Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6979

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346 mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586264 to 588274 15347 mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588631 to 590610 15348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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585,415 - 15346 mRNA_6978 0.77 -2.6
585,450 - 15346 mRNA_6978 0.80 -0.9
585,726 - -0.6
585,861 - -2.6
585,874 - -0.9
585,880 + -1.3
585,888 - -2.4
585,890 + -1.2
585,913 + 0.0
585,916 + -1.7
585,917 + 0.5
585,932 + -3.0
586,034 + -1.0
586,054 - -0.3
586,054 + -1.3
586,066 + -0.5
586,188 - -1.2
586,198 + -2.1
586,199 - -3.1
586,204 - -4.0
586,213 + -2.6
586,218 - 0.2
586,224 - 0.7
586,228 + -1.9
586,230 - -1.1
586,353 - -2.3
586,355 - -0.3
586,361 - -1.0
586,364 + 0.4
586,377 + -3.6
586,378 + -1.2
586,382 + -1.5
586,655 + 15347 mRNA_6979 0.19 -1.1
586,672 + 15347 mRNA_6979 0.20 -1.9
586,800 + 15347 mRNA_6979 0.27 -3.9
586,822 - 15347 mRNA_6979 0.28 -2.8
586,945 + 15347 mRNA_6979 0.34 -0.0
586,950 - 15347 mRNA_6979 0.34 -0.8
587,112 - 15347 mRNA_6979 0.42 -3.2
587,121 + 15347 mRNA_6979 0.43 0.4
587,208 + 15347 mRNA_6979 0.47 -4.1
587,345 - 15347 mRNA_6979 0.54 -2.2
587,397 - 15347 mRNA_6979 0.56 -3.7
587,725 + 15347 mRNA_6979 0.73 -0.7
587,815 + 15347 mRNA_6979 0.77 -0.9
587,979 + 15347 mRNA_6979 0.85 0.2
587,984 - 15347 mRNA_6979 0.86 -1.7
588,227 - -0.4
588,266 - 0.4
588,272 + -1.4
588,392 - -1.1
588,569 + -1.7
588,581 - -0.3
588,585 + -1.4
588,586 - -1.0
588,694 - -3.6
588,730 - 0.1
588,752 - -0.4
589,042 + 15348 mRNA_6980 0.21 -2.9
589,193 - 15348 mRNA_6980 0.28 -1.7
589,197 + 15348 mRNA_6980 0.29 -2.8
589,254 + 15348 mRNA_6980 0.31 -2.5