Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6976

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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581,656 + -0.1
581,675 - -2.5
581,705 - -3.0
581,709 - -3.3
581,720 + -0.4
581,725 + -0.7
581,728 + 0.9
581,730 - -0.4
581,732 + -0.5
581,734 - -2.5
581,734 - -1.1
581,743 + -0.5
581,751 + -2.1
581,755 - -0.2
581,780 - -1.2
581,789 - -1.1
581,795 - -2.7
581,797 - -1.8
581,797 - -2.5
581,800 + -0.8
581,812 + -1.3
581,828 - -0.6
581,846 - -0.4
581,870 - 0.2
581,905 + -0.5
581,969 + -1.9
581,982 - -1.4
581,984 - -1.4
581,987 - -0.1
581,990 - -1.1
581,992 + -1.3
581,993 - -0.2
581,997 - -2.9
582,000 - 1.7
582,004 + -2.2
582,019 - -0.5
582,027 + -1.1
582,035 - -1.1
582,049 - -0.9
582,055 - -2.9
582,056 - 0.6
582,062 + -2.4
582,069 + -3.6
582,071 + -1.2
582,071 - -1.5
582,111 - -0.7
582,125 - -1.4
582,152 - -1.8
582,161 + -1.4
582,164 - -1.0
582,173 - -2.3
582,177 + -2.8
582,181 + -3.0
582,185 + -0.6
582,187 - -1.6
582,199 - 2.2
582,319 + -2.9
582,324 + -2.0
582,350 - -1.0
582,354 - -1.3
582,354 - 1.2
582,375 - -2.0
582,435 - -0.3
582,441 + -0.5
582,468 - -1.1
582,492 - -0.4
582,492 + -1.8
582,596 - -1.2
582,690 - 0.4
582,932 + 15344 mRNA_6976 0.27 -1.2
582,952 + 15344 mRNA_6976 0.29 -1.5
583,366 + 15344 mRNA_6976 0.65 0.5
583,375 + 15344 mRNA_6976 0.66 -0.3
583,496 + 15344 mRNA_6976 0.77 -2.1
584,005 + 15345 mRNA_6977 0.39 -0.9
584,135 - 15345 mRNA_6977 0.62 0.0
584,245 + 15345 mRNA_6977 0.82 -0.3
584,388 - -1.2
584,391 - -2.8
584,392 - -1.6
584,395 - -3.0
584,399 - -0.5
584,401 - -0.9
584,406 - -2.2
584,407 + -3.7
584,411 - -1.4
584,431 + -0.2
584,441 - -3.9
584,447 - -1.8
584,448 + -1.8
584,696 - 15346 mRNA_6978 0.17 0.1
584,721 + 15346 mRNA_6978 0.19 -0.9
584,724 - 15346 mRNA_6978 0.20 1.7
584,756 - 15346 mRNA_6978 0.22 2.1