Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6968

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558352 to 560106 15335 mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560422 to 561850 15336 mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561995 to 564059 15337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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559,445 + 15335 mRNA_6967 0.62 -0.5
559,715 + 15335 mRNA_6967 0.78 0.2
559,982 - -0.8
560,137 + -1.9
560,142 - -3.1
560,164 + -2.7
560,224 + 0.1
560,225 + 0.1
560,226 - 0.5
560,226 - -1.3
560,227 - -1.5
560,231 + -1.0
560,233 + -2.6
560,233 + -3.6
560,234 + -0.1
560,238 - -1.3
560,238 - -1.3
560,242 + -0.2
560,244 - -2.0
560,249 + -3.2
560,262 - -1.1
560,277 - -2.5
560,304 + -1.0
560,313 + -3.3
560,316 - -1.4
560,321 - -0.7
560,321 + -0.4
560,324 + -3.4
560,330 + -2.2
560,331 - -1.0
560,333 + -3.7
560,345 - -1.1
560,346 - -1.9
560,369 + -2.0
560,371 + -0.6
560,455 + -3.1
560,476 + -1.7
560,478 - -2.6
560,486 + -3.4
560,489 - -0.5
560,501 + -1.5
560,616 - 15336 mRNA_6968 0.14 -0.9
560,629 + 15336 mRNA_6968 0.14 -2.8
560,758 - 15336 mRNA_6968 0.24 -4.0
561,034 + 15336 mRNA_6968 0.43 -1.5
561,068 + 15336 mRNA_6968 0.45 -0.1
561,206 - 15336 mRNA_6968 0.55 -1.2
561,381 - 15336 mRNA_6968 0.67 -1.2
561,846 - -2.3