Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6955

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519193 to 522362 15322 mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523015 to 527499 15323 mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528007 to 529680 15324

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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522,410 + -2.0
522,571 + -2.6
522,657 - -1.3
522,672 - -1.6
522,675 + -2.3
522,732 - -4.5
522,735 + -1.9
522,736 - -1.4
522,743 - -2.6
522,749 - -2.2
522,749 - -0.9
522,750 + -0.4
522,779 + -0.5
522,796 + -2.4
522,799 + -2.3
522,799 - -1.5
522,800 - 1.6
522,806 - -0.3
522,809 - -0.5
522,826 - -1.7
522,938 - -0.4
522,946 + -0.3
522,946 - -0.9
522,947 - -3.2
522,950 + -0.7
522,951 - -2.7
522,954 - -1.3
522,966 + -1.4
522,969 + -0.8
522,974 - -2.9
522,982 + -3.4
522,991 + -1.9
522,999 + -0.7
523,008 + -0.4
523,101 + -1.6
523,103 - 0.1
523,118 - -0.3
523,155 - 0.4
523,255 + -0.3
523,293 + -0.8
523,579 - 15323 mRNA_6955 0.13 -4.2
523,720 - 15323 mRNA_6955 0.16 -0.9
523,724 - 15323 mRNA_6955 0.16 -1.1
524,039 - 15323 mRNA_6955 0.23 -1.6
524,182 + 15323 mRNA_6955 0.26 -0.1
524,610 + 15323 mRNA_6955 0.36 -1.9
524,929 - 15323 mRNA_6955 0.43 -2.9
525,443 - 15323 mRNA_6955 0.54 -0.0
525,483 + 15323 mRNA_6955 0.55 -2.5
525,989 + 15323 mRNA_6955 0.66 -0.6
526,029 - 15323 mRNA_6955 0.67 -1.0
526,307 - 15323 mRNA_6955 0.73 -1.6
526,379 - 15323 mRNA_6955 0.75 -1.5
526,581 - 15323 mRNA_6955 0.80 -3.5
526,775 + 15323 mRNA_6955 0.84 -3.4
527,203 - -0.7
527,963 + -1.4
528,061 - -0.5
528,092 + -5.7
528,386 - 15324 mRNA_6956 0.23 -3.3