Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6880

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6879: 15247 - KOG0293 WD40 repeat-containing protein, at 339326 to 341674 15247 mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342593 to 344205 15248 mRNA_6881: 15249 - Hypothetical Protein, at 344637 to 347114 15249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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341,596 + -1.4
341,607 - -1.5
341,730 - -0.2
341,741 + -1.0
341,752 - -0.9
341,756 + -1.1
341,904 + -3.0
342,053 + -0.1
342,058 + -1.2
342,188 - -1.5
342,188 - -0.9
342,195 + -0.2
342,198 - -1.6
342,211 + -1.3
342,233 + -0.1
342,347 + -0.2
342,347 + -3.3
342,357 - -0.3
342,361 - -5.0
342,371 + -2.2
342,508 - -3.8
342,533 + -1.2
342,636 - -0.5
342,660 + -1.8
342,786 + 15248 mRNA_6880 0.12 -3.6
343,237 - 15248 mRNA_6880 0.40 -3.0
343,385 + 15248 mRNA_6880 0.49 -1.7
343,753 + 15248 mRNA_6880 0.72 -3.4
343,801 - 15248 mRNA_6880 0.75 -1.8
343,821 - 15248 mRNA_6880 0.76 -2.0
343,982 - 15248 mRNA_6880 0.86 -1.8
344,024 - 15248 mRNA_6880 0.89 -0.3
344,110 - -0.6
344,127 - -1.7
344,129 - -1.6
344,141 + -0.9
344,314 + -0.6
344,422 + -3.1
344,423 + -3.1
344,428 + -0.8
344,430 + -0.9
344,453 - -3.3
344,462 + 0.1
344,463 - -2.4
344,470 + -3.4
344,475 + -0.4
344,546 - -0.3
344,551 + -1.5
344,585 + -0.4
344,585 + -0.0
344,587 + -1.6
344,587 + -2.2
344,615 - -1.3
344,713 + -0.1
344,726 + -1.5
345,068 + 15249 mRNA_6881 0.17 -1.5
345,145 - 15249 mRNA_6881 0.21 -0.6
345,178 + 15249 mRNA_6881 0.22 0.2
345,198 + 15249 mRNA_6881 0.23 -2.6
345,199 + 15249 mRNA_6881 0.23 -0.5