Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6876

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329876 to 331485 15243 mRNA_6876: 15244 - Hypothetical Protein, at 331964 to 333369 15244 mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333940 to 335664 15245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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331,264 - 15243 mRNA_6875 0.86 -1.7
331,281 + 15243 mRNA_6875 0.87 -1.6
331,410 + -2.3
331,415 - -2.8
331,554 - 0.7
331,689 - 0.6
331,705 - 1.0
331,846 + -1.6
331,863 - -0.4
331,877 - -1.7
332,736 + 15244 mRNA_6876 0.55 -1.5
332,765 + 15244 mRNA_6876 0.57 -0.4
332,909 + 15244 mRNA_6876 0.67 -0.0
332,911 + 15244 mRNA_6876 0.67 -2.1
333,028 + 15244 mRNA_6876 0.76 -1.4
333,051 + 15244 mRNA_6876 0.77 -2.2
333,326 - -0.6
333,326 + -3.2
333,456 - -3.0
333,470 - -0.1
333,530 - -1.9
333,626 + -1.2
333,627 - -0.6
333,639 + -2.2
333,646 - -0.6
333,648 + -0.2
333,650 + 1.0
333,660 + -3.2
333,791 - -1.5
333,961 + -1.7
334,080 - -0.3
334,095 - -1.1
334,188 - 15245 mRNA_6877 0.14 -3.3
334,196 - 15245 mRNA_6877 0.15 -1.4
334,200 + 15245 mRNA_6877 0.15 0.4
334,332 - 15245 mRNA_6877 0.23 -0.8