Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6871

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315464 to 319765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325677 to 326693 15240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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319,062 - 15238 mRNA_6870 0.84 -2.4
319,068 + 15238 mRNA_6870 0.84 -0.3
319,527 - -0.6
319,665 - -4.0
319,807 - 1.1
319,809 - -1.6
320,246 + -2.1
321,181 - 15239 mRNA_6871 0.22 -1.8
321,351 - 15239 mRNA_6871 0.25 -0.6
321,727 - 15239 mRNA_6871 0.32 -2.2
321,898 + 15239 mRNA_6871 0.35 -0.6
321,929 + 15239 mRNA_6871 0.36 0.0
322,037 + 15239 mRNA_6871 0.38 -0.2
322,075 - 15239 mRNA_6871 0.38 -1.6
322,384 + 15239 mRNA_6871 0.44 -1.2
322,809 + 15239 mRNA_6871 0.52 -2.3
323,000 - 15239 mRNA_6871 0.55 -2.9
323,809 - 15239 mRNA_6871 0.70 -2.0
323,862 + 15239 mRNA_6871 0.70 -2.3
324,104 + 15239 mRNA_6871 0.75 -1.9
324,247 - 15239 mRNA_6871 0.77 -1.2
324,562 + 15239 mRNA_6871 0.83 -1.5
324,705 + 15239 mRNA_6871 0.86 -0.8
324,714 - 15239 mRNA_6871 0.86 -2.9
324,714 + 15239 mRNA_6871 0.86 -2.6
324,947 - -2.9
324,966 - -4.1
324,970 + -2.5
325,275 - -1.4
325,389 + -2.0
325,443 - -1.3
325,453 + -1.8
325,475 - -0.4
325,563 - -2.0
325,592 - -1.0
325,594 - -0.2
325,598 - -0.5
325,754 - -2.2
325,982 - 15240 mRNA_6872 0.30 -1.7
326,032 - 15240 mRNA_6872 0.35 -2.2
326,483 - 15240 mRNA_6872 0.79 -1.0