Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6855

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280873 to 281900 15222 mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282233 to 283773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284062 to 291229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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281,238 + 15222 mRNA_6854 0.36 -1.5
281,254 - 15222 mRNA_6854 0.37 -1.0
281,300 - 15222 mRNA_6854 0.42 -2.4
281,341 + 15222 mRNA_6854 0.46 1.8
281,483 + 15222 mRNA_6854 0.59 -0.7
281,527 - 15222 mRNA_6854 0.64 -3.3
281,687 + 15222 mRNA_6854 0.79 -3.0
281,779 - 15222 mRNA_6854 0.88 -0.5
281,797 + 15222 mRNA_6854 0.90 0.2
281,933 + -1.1
281,941 + -3.1
282,192 - 0.7
282,338 + 1.8
282,372 - -1.6
282,378 + -1.8
282,390 + 15223 mRNA_6855 0.10 -1.3
282,939 - 15223 mRNA_6855 0.46 -1.7
282,977 - 15223 mRNA_6855 0.48 -1.0
283,072 + 15223 mRNA_6855 0.54 -3.2
283,225 - 15223 mRNA_6855 0.64 -1.6
283,306 + 15223 mRNA_6855 0.70 -1.9
283,374 + 15223 mRNA_6855 0.74 -0.2
283,528 - 15223 mRNA_6855 0.84 0.6
283,671 - -1.3
283,675 + -0.3
283,681 - -3.0
283,682 - -2.7
283,684 - -1.0
283,687 - -0.3
283,703 + 0.1
283,710 - -0.1
283,718 + -0.9
283,834 + -2.5
283,985 + -4.8
283,989 - -0.9
283,991 - 0.4
283,991 + -2.2
284,019 - -0.8
284,134 - 0.9
284,136 - 0.2
284,286 - 0.0
284,468 - -0.2
284,652 + -0.1