Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6840

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6839: 15207 - K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1, at 242700 to 245129 15207 mRNA_6840: 15208 - SUPERFAMILY--SSF81383, at 245238 to 247225 15208 mRNA_6841: 15209 - K14328 UPF3, RENT3 regulator of nonsense transcripts 3, at 247342 to 248930 15209

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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244,419 - 15207 mRNA_6839 0.71 -0.7
244,481 - 15207 mRNA_6839 0.73 -3.7
244,492 + 15207 mRNA_6839 0.74 -0.2
244,504 + 15207 mRNA_6839 0.74 -3.7
244,514 + 15207 mRNA_6839 0.75 -0.7
244,514 + 15207 mRNA_6839 0.75 -3.4
244,518 + 15207 mRNA_6839 0.75 -2.5
244,550 - 15207 mRNA_6839 0.76 -1.0
244,645 - 15207 mRNA_6839 0.80 -0.4
244,804 + 15207 mRNA_6839 0.87 -1.7
244,822 + 15207 mRNA_6839 0.87 -2.3
244,904 - -1.5
245,060 + 0.8
245,105 + -2.1
245,364 - -0.2
245,434 - -0.3
245,778 + 15208 mRNA_6840 0.27 -2.2
246,100 + 15208 mRNA_6840 0.43 -0.1
246,138 + 15208 mRNA_6840 0.45 0.1
246,156 + 15208 mRNA_6840 0.46 -2.6
246,252 - 15208 mRNA_6840 0.51 -2.1
246,256 + 15208 mRNA_6840 0.51 0.3
246,500 - 15208 mRNA_6840 0.63 -1.0
246,529 - 15208 mRNA_6840 0.65 -2.1
246,529 + 15208 mRNA_6840 0.65 -2.7
246,555 - 15208 mRNA_6840 0.66 -1.9
246,571 - 15208 mRNA_6840 0.67 -3.5
246,699 - 15208 mRNA_6840 0.73 -0.2
246,707 + 15208 mRNA_6840 0.74 -3.2
246,754 - 15208 mRNA_6840 0.76 -1.4
246,754 - 15208 mRNA_6840 0.76 -0.5
246,828 + 15208 mRNA_6840 0.80 -0.0
246,828 + 15208 mRNA_6840 0.80 0.6
247,123 - 1.8
247,269 + -1.4
247,270 - -1.4
247,275 + -0.3
247,293 + -0.5