Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6830

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225875 to 227277 15197 mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227427 to 228724 15198 mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229033 to 229533 15199 mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229712 to 231545 15200

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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227,362 + -2.0
227,366 - -3.9
227,366 + 0.1
227,519 + -0.9
227,817 + 15198 mRNA_6830 0.30 -2.8
227,849 + 15198 mRNA_6830 0.33 0.5
227,853 - 15198 mRNA_6830 0.33 -2.6
227,950 + 15198 mRNA_6830 0.40 -2.3
227,960 + 15198 mRNA_6830 0.41 -3.1
228,127 - 15198 mRNA_6830 0.54 -2.0
228,237 - 15198 mRNA_6830 0.62 -2.7
228,250 - 15198 mRNA_6830 0.63 -3.4
228,272 + 15198 mRNA_6830 0.65 -1.6
228,367 + 15198 mRNA_6830 0.72 -0.7
228,418 + 15198 mRNA_6830 0.76 -3.1
228,564 + 15198 mRNA_6830 0.88 -3.3
228,683 + -1.1
228,847 + -1.2
228,872 + -3.1
228,894 - 0.5
228,981 + -1.0
229,147 - 15199 mRNA_6831 0.23 1.1
229,149 + 15199 mRNA_6831 0.23 -0.8
229,150 - 15199 mRNA_6831 0.23 -2.0
229,457 - 15199 mRNA_6831 0.85 -0.4
229,467 + 15199 mRNA_6831 0.87 -2.1
229,467 + 15199 mRNA_6831 0.87 -3.8
229,545 - 1.6
229,568 + -1.4
229,593 - -0.5