Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6828

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6827: 15195 - K19029 PFKFB2 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 2, at 220795 to 223587 15195 mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223853 to 225358 15196 mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225875 to 227277 15197

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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222,947 - 15195 mRNA_6827 0.77 -3.2
223,094 - 15195 mRNA_6827 0.82 0.7
223,099 - 15195 mRNA_6827 0.82 -1.6
223,103 + 15195 mRNA_6827 0.83 -2.2
223,104 + 15195 mRNA_6827 0.83 -3.3
223,111 + 15195 mRNA_6827 0.83 -2.5
223,149 + 15195 mRNA_6827 0.84 -0.9
223,253 + 15195 mRNA_6827 0.88 -2.0
223,262 - 15195 mRNA_6827 0.88 -1.6
223,370 + -2.0
223,371 - -4.4
223,473 - -1.4
223,491 - -2.0
223,495 - -0.8
223,517 - -2.3
223,536 - 0.0
223,540 + -0.3
223,541 + -0.4
223,541 + -1.1
223,682 - 1.0
223,865 + -2.2
224,274 - 15196 mRNA_6828 0.28 0.3
224,502 - 15196 mRNA_6828 0.43 -3.2
224,981 + 15196 mRNA_6828 0.75 -1.8
225,112 - 15196 mRNA_6828 0.84 -2.0
225,130 + 15196 mRNA_6828 0.85 -0.9
225,142 - 15196 mRNA_6828 0.86 -3.2
225,449 - -0.2
225,455 + -1.9
225,461 + -0.1
225,568 + -3.0
225,585 - -1.6
225,592 + -4.3
225,597 + -0.1
225,730 - -1.5
225,896 + -2.4
225,901 - -1.7