Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6812

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194472 to 196083 15179 mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196368 to 197656 15180 mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198108 to 198984 15181

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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195,957 + -3.5
196,333 - -0.6
196,502 - 15180 mRNA_6812 0.10 -2.5
196,503 + 15180 mRNA_6812 0.10 -0.7
196,512 - 15180 mRNA_6812 0.11 0.9
196,650 + 15180 mRNA_6812 0.22 -1.2
196,861 - 15180 mRNA_6812 0.38 -0.7
196,961 + 15180 mRNA_6812 0.46 -0.1
197,023 + 15180 mRNA_6812 0.51 -0.1
197,094 + 15180 mRNA_6812 0.56 2.1
197,136 - 15180 mRNA_6812 0.60 -2.8
197,237 - 15180 mRNA_6812 0.67 -0.9
197,561 - -1.6
197,582 + -3.0
197,649 + 1.1
197,723 + 1.5
197,734 - -1.4
197,837 + -1.7
197,838 - -2.9
197,851 - -0.4
197,853 + -1.9
197,859 + -0.2
198,180 + -2.4
198,194 + -0.7
198,275 + 15181 mRNA_6813 0.19 -2.7
198,331 + 15181 mRNA_6813 0.25 -1.2
198,451 + 15181 mRNA_6813 0.39 -2.0
198,580 - 15181 mRNA_6813 0.54 0.2
198,595 - 15181 mRNA_6813 0.56 -0.5