Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6801

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169 mRNA_6802: 15170 - Hypothetical Protein, at 170561 to 172312 15170

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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167,478 + -0.6
167,606 + -0.8
167,611 + -2.4
167,614 - -1.3
167,626 - 0.3
167,731 - -0.5
167,757 - -2.5
167,763 - -2.0
167,772 + -3.1
167,795 - 0.2
167,890 + -0.5
167,891 + -0.8
167,899 - 0.1
167,900 - -1.0
167,902 + -1.7
167,946 - -1.1
167,953 - -1.2
167,960 - 0.8
167,964 - -0.7
168,029 + -0.1
168,079 - -3.1
168,080 + -1.8
168,085 - -3.4
168,086 + -0.3
168,089 - -3.3
168,089 - -1.5
168,089 - 0.2
168,090 - -3.3
168,090 - -2.2
168,090 + -2.7
168,090 - -1.3
168,091 + -2.4
168,093 + -4.0
168,097 + -0.0
168,107 + -3.5
168,116 + -0.1
168,117 - -1.1
168,117 + 0.1
168,118 - -0.1
168,123 - 0.0
168,138 + 0.9
168,141 - -0.8
168,148 + -2.9
168,149 + -2.2
168,171 + -0.6
168,174 + -1.1
168,177 - -2.4
168,181 - -0.8
168,190 - -1.1
168,190 + -1.4
168,200 - -2.3
168,203 - -0.6
168,205 - -1.3
168,212 + -0.9
168,220 - 0.5
168,224 + -1.7
168,226 - -1.0
168,228 - -0.6
168,229 - -0.8
168,229 + -3.3
168,244 + -1.9
168,244 + -3.6
168,245 - -2.7
168,247 + -1.6
168,247 + -1.2
168,249 + -0.5
168,250 - -0.4
168,279 - -0.4
168,344 - -3.3
168,360 - -1.8
168,383 + -1.7
168,385 - -0.8
168,386 - -0.7
168,505 - -2.5
168,532 - -0.1
168,542 - -0.7
168,702 + 15169 mRNA_6801 0.13 -0.6
168,705 + 15169 mRNA_6801 0.13 -0.5
168,833 + 15169 mRNA_6801 0.21 -1.5
168,837 - 15169 mRNA_6801 0.21 -0.6
168,837 + 15169 mRNA_6801 0.21 -2.3
169,101 - 15169 mRNA_6801 0.35 -3.1
169,264 + 15169 mRNA_6801 0.44 -2.7
169,418 + 15169 mRNA_6801 0.53 -2.2
169,661 + 15169 mRNA_6801 0.66 -2.3
169,662 - 15169 mRNA_6801 0.66 -1.6
169,965 - 15169 mRNA_6801 0.83 -1.1
170,115 - -1.3
170,278 - -1.2
170,279 - -1.0
170,356 - 0.5
170,383 - -2.3
170,388 + -0.9
170,402 - -2.0
170,407 - 0.0
170,410 + -2.6
170,438 - -1.1
170,444 - -0.8
170,444 + -3.3
170,445 - -1.7
170,445 + -1.5
170,446 - 0.6
170,447 + -1.5
170,449 + 0.1
170,453 + -2.2
170,453 + -2.6
170,454 + -1.8
170,460 - -2.4
170,460 + -2.4
170,470 - 0.4
170,479 + -1.3
170,489 + -3.0
170,591 - -3.1
170,603 + 0.8
170,607 - -2.1
170,612 - -0.5
170,618 + -3.0
170,635 + 2.3
170,646 + -2.5
170,655 + -0.1
170,765 - 15170 mRNA_6802 0.12 -1.5
170,778 - 15170 mRNA_6802 0.12 -1.8
170,783 + 15170 mRNA_6802 0.13 -2.3
170,806 - 15170 mRNA_6802 0.14 -0.1
170,810 + 15170 mRNA_6802 0.14 -1.0
170,961 - 15170 mRNA_6802 0.23 0.0
171,223 + 15170 mRNA_6802 0.38 -0.3