Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6796

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150190 to 154769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155550 to 156068 15164 mRNA_6797: 15165 - BLAST Formin-like protein 3 [Rhizoctonia solani], at 156306 to 160746 15165

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,586 + -2.6
154,713 - -3.0
154,732 + -0.9
154,914 + -0.9
155,147 + -2.8
155,166 + 0.2
155,186 + -1.0
155,298 + -3.0
155,324 - -1.1
155,337 + -0.8
155,446 + -5.1
155,462 - -2.8
155,481 + -1.9
155,498 + -1.8
155,626 - 15164 mRNA_6796 0.15 0.1
155,632 - 15164 mRNA_6796 0.16 -3.0
155,646 - 15164 mRNA_6796 0.18 -2.9
155,651 + 15164 mRNA_6796 0.19 -1.5
155,708 - 15164 mRNA_6796 0.30 -2.1
155,754 - 15164 mRNA_6796 0.39 -0.5
155,771 - 15164 mRNA_6796 0.43 0.6
155,773 + 15164 mRNA_6796 0.43 -1.8
155,774 - 15164 mRNA_6796 0.43 -1.3
155,778 - 15164 mRNA_6796 0.44 -1.3
155,784 + 15164 mRNA_6796 0.45 -1.7
155,795 + 15164 mRNA_6796 0.47 -1.5
155,795 + 15164 mRNA_6796 0.47 -1.9
155,799 + 15164 mRNA_6796 0.48 -2.1
155,809 + 15164 mRNA_6796 0.50 -0.6
155,811 + 15164 mRNA_6796 0.50 -0.2
155,822 - 15164 mRNA_6796 0.52 -1.9
155,916 - 15164 mRNA_6796 0.71 -1.0
155,938 - 15164 mRNA_6796 0.75 -3.9
155,943 - 15164 mRNA_6796 0.76 -1.8
155,953 - 15164 mRNA_6796 0.78 -0.9
155,963 + 15164 mRNA_6796 0.80 0.2
156,099 - -1.0
156,108 + -2.1
156,117 - -0.4
156,410 + -1.3
156,498 - -0.3
156,519 - -0.9
156,679 - 0.3
156,679 - 1.5
156,918 + 15165 mRNA_6797 0.14 -1.2
156,919 - 15165 mRNA_6797 0.14 -2.5
156,921 + 15165 mRNA_6797 0.14 -1.1