Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6795

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162 mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150190 to 154769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155550 to 156068 15164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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149,257 - 15162 mRNA_6794 0.49 -3.9
149,551 - 15162 mRNA_6794 0.67 -0.3
149,796 - 15162 mRNA_6794 0.82 -0.1
149,852 + 15162 mRNA_6794 0.86 -1.0
150,009 - -2.1
150,133 + -1.7
150,138 + -1.7
150,151 - -3.4
150,282 - -2.7
150,296 + -2.2
150,417 + 1.8
150,469 - -1.8
150,608 + -1.3
150,864 - 15163 mRNA_6795 0.15 1.2
150,895 - 15163 mRNA_6795 0.15 -3.5
151,027 - 15163 mRNA_6795 0.18 -3.5
151,051 - 15163 mRNA_6795 0.19 -1.7
151,357 + 15163 mRNA_6795 0.25 0.1
151,492 + 15163 mRNA_6795 0.28 -1.0
152,216 - 15163 mRNA_6795 0.44 -1.6
152,346 - 15163 mRNA_6795 0.47 -1.7
152,355 + 15163 mRNA_6795 0.47 -1.3
152,456 + 15163 mRNA_6795 0.49 -1.2
152,660 - 15163 mRNA_6795 0.54 -2.3
153,245 - 15163 mRNA_6795 0.67 -1.4
153,281 + 15163 mRNA_6795 0.67 1.1
153,396 + 15163 mRNA_6795 0.70 -2.0
153,694 - 15163 mRNA_6795 0.77 -0.8
153,842 - 15163 mRNA_6795 0.80 1.1
154,010 - 15163 mRNA_6795 0.83 -0.6
154,156 + 15163 mRNA_6795 0.87 -2.3
154,270 - 15163 mRNA_6795 0.89 -1.3
154,288 - 15163 mRNA_6795 0.89 -2.1
154,320 + -0.7
154,586 + -2.6
154,713 - -3.0
154,732 + -0.9
154,914 + -0.9
155,147 + -2.8
155,166 + 0.2
155,186 + -1.0
155,298 + -3.0
155,324 - -1.1
155,337 + -0.8
155,446 + -5.1
155,462 - -2.8
155,481 + -1.9
155,498 + -1.8
155,626 - 15164 mRNA_6796 0.15 0.1
155,632 - 15164 mRNA_6796 0.16 -3.0
155,646 - 15164 mRNA_6796 0.18 -2.9
155,651 + 15164 mRNA_6796 0.19 -1.5
155,708 - 15164 mRNA_6796 0.30 -2.1
155,754 - 15164 mRNA_6796 0.39 -0.5