Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6793

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143720 to 144685 15160 mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144793 to 148155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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143,850 - 15160 mRNA_6792 0.13 -1.3
143,906 + 15160 mRNA_6792 0.19 -0.7
144,023 + 15160 mRNA_6792 0.31 -1.5
144,186 + 15160 mRNA_6792 0.48 -4.0
144,602 - -0.8
144,614 + -2.3
144,638 + -0.4
144,742 + 0.8
144,752 + -1.0
144,755 - -1.3
144,760 + -2.0
144,762 - -2.0
144,765 + -0.5
144,775 - -1.5
144,778 + -3.1
144,783 - -2.4
144,923 + -0.6
144,924 - -1.6
144,937 + -2.0
144,939 - -3.1
145,016 + -0.9
145,190 + 15161 mRNA_6793 0.12 -1.5
145,219 + 15161 mRNA_6793 0.13 -0.4
145,247 + 15161 mRNA_6793 0.13 -2.0
145,282 + 15161 mRNA_6793 0.15 0.8
145,362 - 15161 mRNA_6793 0.17 -3.0
145,363 + 15161 mRNA_6793 0.17 -2.9
145,758 + 15161 mRNA_6793 0.29 -3.8
145,798 + 15161 mRNA_6793 0.30 -2.3
145,800 + 15161 mRNA_6793 0.30 -2.6
146,099 + 15161 mRNA_6793 0.39 -0.3
146,116 + 15161 mRNA_6793 0.39 -2.4
146,264 + 15161 mRNA_6793 0.44 -1.2
146,391 - 15161 mRNA_6793 0.48 -2.4
146,494 - 15161 mRNA_6793 0.51 -2.0
146,514 + 15161 mRNA_6793 0.51 -3.0
146,793 - 15161 mRNA_6793 0.59 -1.8
146,799 + 15161 mRNA_6793 0.60 -0.4
146,927 - 15161 mRNA_6793 0.63 -1.5
147,086 - 15161 mRNA_6793 0.68 -1.9
147,518 - 15161 mRNA_6793 0.81 -3.6
147,817 + 15161 mRNA_6793 0.90 -3.1
148,254 - -1.4
148,270 + -0.5
148,370 - -2.2
148,401 - -1.2
148,421 - -1.8
148,545 - 0.2
148,546 + -1.2
148,698 - 15162 mRNA_6794 0.14 1.2
148,700 - 15162 mRNA_6794 0.14 -2.1
149,032 + 15162 mRNA_6794 0.35 -0.7