Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6788

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125988 to 127224 15154 mRNA_6787: 15155 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 127368 to 127805 15155 mRNA_6788: 15156 - K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum, at 127975 to 131651 15156 mRNA_6789: 15157 - KOG3335 Predicted coiled-coil protein, at 131775 to 132958 15157

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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127,838 - -1.2
127,841 + -2.1
127,863 + -3.8
127,863 - -1.2
127,864 + 1.7
127,866 - 0.0
127,867 - -1.1
128,011 - 0.0
128,013 + -3.4
128,029 + -2.0
128,058 + -1.6
128,340 + -0.1
128,381 - 15156 mRNA_6788 0.11 0.9
129,079 + 15156 mRNA_6788 0.30 -2.4
129,349 + 15156 mRNA_6788 0.37 -2.1
129,690 + 15156 mRNA_6788 0.47 -2.1
129,696 + 15156 mRNA_6788 0.47 -2.1
129,941 - 15156 mRNA_6788 0.53 -3.1
129,971 - 15156 mRNA_6788 0.54 -0.6
130,209 - 15156 mRNA_6788 0.61 -0.4
130,232 - 15156 mRNA_6788 0.61 0.3
130,680 - 15156 mRNA_6788 0.74 -1.1
131,007 - 15156 mRNA_6788 0.82 -3.3
131,199 + 15156 mRNA_6788 0.88 -3.5
131,215 - 15156 mRNA_6788 0.88 -1.2
131,233 + 15156 mRNA_6788 0.89 -2.3
131,369 - -5.1
131,574 - -1.5
131,727 + -2.7
131,817 - -1.8
132,175 + 15157 mRNA_6789 0.34 -1.6
132,449 + 15157 mRNA_6789 0.57 -2.0
132,612 - 15157 mRNA_6789 0.71 -0.4