Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6737

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26533 to 28608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29328 to 32887 15105 mRNA_6738: 15106 - Hypothetical Protein, at 32978 to 33241 15106 mRNA_6739: 15107 - BLAST polysaccharide lyase family 14 protein [Mixia osm..., at 33495 to 35587 15107

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,374 - 15104 mRNA_6736 0.89 -2.2
28,500 - -4.0
28,653 - -1.9
28,712 - -0.4
28,946 + -0.7
28,970 + -2.7
28,990 + -1.4
29,115 - -0.8
29,121 - -1.3
29,124 + -2.4
29,269 + -2.1
29,399 - -0.7
29,449 + -1.9
29,540 - -2.0
29,550 - -2.8
29,585 - -0.5
29,606 + -1.5
29,690 - 15105 mRNA_6737 0.10 -1.1
29,699 + 15105 mRNA_6737 0.10 -2.0
29,746 + 15105 mRNA_6737 0.12 -1.5
29,836 + 15105 mRNA_6737 0.14 -2.1
30,011 + 15105 mRNA_6737 0.19 -2.3
30,136 + 15105 mRNA_6737 0.23 -0.6
30,288 - 15105 mRNA_6737 0.27 -0.7
30,417 + 15105 mRNA_6737 0.31 -2.7
30,446 + 15105 mRNA_6737 0.31 -0.6
30,845 - 15105 mRNA_6737 0.43 -1.1
31,158 - 15105 mRNA_6737 0.51 -1.0
31,310 - 15105 mRNA_6737 0.56 -2.8
31,481 - 15105 mRNA_6737 0.60 -1.1
31,607 - 15105 mRNA_6737 0.64 -0.6
31,686 - 15105 mRNA_6737 0.66 -3.6
31,725 + 15105 mRNA_6737 0.67 -1.2
31,881 + 15105 mRNA_6737 0.72 -3.0
31,986 - 15105 mRNA_6737 0.75 -0.5
32,059 - 15105 mRNA_6737 0.77 -3.0
32,076 + 15105 mRNA_6737 0.77 -1.6
32,236 + 15105 mRNA_6737 0.82 -3.7
32,282 + 15105 mRNA_6737 0.83 -3.7
32,507 - 15105 mRNA_6737 0.89 -1.1
32,608 + -1.4
32,639 + -0.1
32,639 + -0.9
32,642 - 0.9
32,642 - -2.1
32,677 - -0.6
32,687 + -2.4
32,687 + -0.2
32,737 - -0.4
32,738 + -0.8
32,777 + -2.1
32,839 - -1.0
33,105 - 15106 mRNA_6738 0.48 -0.9
33,228 - 0.1
33,402 + -1.7
33,536 - -1.2
33,559 - -2.6