Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6700

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1479159 to 1480660 15067 mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1481002 to 1482828 15068 mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1482980 to 1485101 15069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,480,212 + 15067 mRNA_6699 0.70 -0.1
1,480,270 - 15067 mRNA_6699 0.74 -1.1
1,480,447 - 15067 mRNA_6699 0.86 0.5
1,480,454 + 15067 mRNA_6699 0.86 0.7
1,480,763 - -1.0
1,480,884 + 0.1
1,480,885 - -2.0
1,481,291 + 15068 mRNA_6700 0.16 -0.5
1,481,886 + 15068 mRNA_6700 0.48 -0.2
1,482,021 - 15068 mRNA_6700 0.56 -1.8
1,482,370 + 15068 mRNA_6700 0.75 -2.3
1,482,661 - -0.3
1,482,668 - -1.8
1,482,686 - 0.4
1,482,802 + -1.5
1,482,812 + -0.3
1,482,815 - -1.6
1,483,046 - -1.6
1,483,054 + -0.6
1,483,056 - -3.4
1,483,112 - -1.1
1,483,296 - 15069 mRNA_6701 0.15 -0.8
1,483,303 - 15069 mRNA_6701 0.15 -1.0
1,483,382 + 15069 mRNA_6701 0.19 -4.4
1,483,430 + 15069 mRNA_6701 0.21 -2.2
1,483,686 + 15069 mRNA_6701 0.33 -2.6