Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6675

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1418030 to 1419199 15042 mRNA_6675: 15043 - Hypothetical Protein, at 1419227 to 1419845 15043 mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1419972 to 1420806 15044

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,418,340 - 15042 mRNA_6674 0.26 1.2
1,418,464 - 15042 mRNA_6674 0.37 -2.2
1,418,492 - 15042 mRNA_6674 0.39 -1.3
1,418,643 + 15042 mRNA_6674 0.52 -2.2
1,418,769 + 15042 mRNA_6674 0.63 -0.8
1,418,936 - 15042 mRNA_6674 0.77 0.9
1,419,219 + -1.8
1,419,340 - 15043 mRNA_6675 0.18 -1.8
1,419,488 - 15043 mRNA_6675 0.42 -0.3
1,419,507 + 15043 mRNA_6675 0.45 -2.3
1,419,527 - 15043 mRNA_6675 0.48 -0.7
1,419,628 + 15043 mRNA_6675 0.65 -0.0
1,419,629 + 15043 mRNA_6675 0.65 -0.8
1,419,636 + 15043 mRNA_6675 0.66 -1.0
1,419,646 + 15043 mRNA_6675 0.68 -1.5
1,419,647 + 15043 mRNA_6675 0.68 0.3
1,419,648 + 15043 mRNA_6675 0.68 -0.1
1,419,654 - 15043 mRNA_6675 0.69 -2.4
1,419,659 + 15043 mRNA_6675 0.70 -0.5
1,419,670 + 15043 mRNA_6675 0.72 -1.8
1,419,778 - 15043 mRNA_6675 0.89 -0.3
1,419,780 + 15043 mRNA_6675 0.89 -0.9
1,419,811 + -2.1
1,419,811 + -0.1
1,419,827 - -0.8
1,419,880 + -0.8
1,419,938 - -1.7
1,419,950 - -2.0
1,419,975 - -0.5
1,419,976 + -2.9
1,419,991 - 0.3
1,420,118 + 15044 mRNA_6676 0.17 -2.0
1,420,122 + 15044 mRNA_6676 0.18 -0.5
1,420,699 + 15044 mRNA_6676 0.87 -2.2
1,420,750 - -0.6
1,420,760 - -2.2
1,420,809 - -1.4
1,420,813 + 0.0