Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6673

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6672: 15040 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1414224 to 1415709 15040 mRNA_6673: 15041 - Hypothetical Protein, at 1416296 to 1417315 15041 mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1418030 to 1419199 15042

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,415,434 + 15040 mRNA_6672 0.81 -1.5
1,415,612 - -0.0
1,415,649 + -1.6
1,415,661 + -0.1
1,415,860 - -0.3
1,415,885 - -0.7
1,415,932 - -2.2
1,415,978 + -2.3
1,415,979 + -1.3
1,416,136 + -0.4
1,416,139 - -0.4
1,416,146 + -2.0
1,416,192 - -0.1
1,416,336 + -2.5
1,416,336 + -1.2
1,416,345 + -1.0
1,416,466 - 15041 mRNA_6673 0.17 0.7
1,416,469 + 15041 mRNA_6673 0.17 -1.2
1,416,474 + 15041 mRNA_6673 0.17 -2.0
1,416,624 + 15041 mRNA_6673 0.32 -1.4
1,416,636 + 15041 mRNA_6673 0.33 -2.6
1,416,637 - 15041 mRNA_6673 0.33 -2.2
1,416,637 - 15041 mRNA_6673 0.33 -2.8
1,416,637 + 15041 mRNA_6673 0.33 0.6
1,416,670 - 15041 mRNA_6673 0.37 -0.6
1,416,731 - 15041 mRNA_6673 0.43 -0.4
1,416,755 + 15041 mRNA_6673 0.45 -0.2
1,416,764 - 15041 mRNA_6673 0.46 0.2
1,416,770 - 15041 mRNA_6673 0.46 -4.3
1,416,778 + 15041 mRNA_6673 0.47 -1.0
1,416,779 - 15041 mRNA_6673 0.47 -1.0
1,416,781 - 15041 mRNA_6673 0.48 0.4
1,416,836 + 15041 mRNA_6673 0.53 -1.5
1,416,894 + 15041 mRNA_6673 0.59 -1.5
1,416,906 + 15041 mRNA_6673 0.60 -1.1
1,416,915 + 15041 mRNA_6673 0.61 1.0
1,416,916 + 15041 mRNA_6673 0.61 0.0
1,416,917 + 15041 mRNA_6673 0.61 -0.6
1,416,919 + 15041 mRNA_6673 0.61 -0.5
1,416,929 - 15041 mRNA_6673 0.62 -0.3
1,416,967 - 15041 mRNA_6673 0.66 -3.5
1,417,048 + 15041 mRNA_6673 0.74 -1.9
1,417,048 + 15041 mRNA_6673 0.74 -1.8
1,417,086 - 15041 mRNA_6673 0.77 -2.2
1,417,226 + -1.3
1,417,233 - -0.7
1,417,234 - -0.4
1,417,235 - -1.3
1,417,361 - -1.7
1,417,363 - 0.9
1,417,377 + -1.9
1,417,380 - -0.1
1,417,381 + -2.0
1,417,383 + -2.5
1,417,389 - -0.9
1,417,389 + 0.3
1,417,409 - 0.0
1,417,495 - 0.1
1,417,506 - 1.4
1,417,510 + -4.9
1,417,514 + 2.3
1,417,534 - -1.5
1,417,543 - -0.9
1,417,549 + -0.3
1,417,552 - -0.3
1,417,555 + -0.3
1,417,566 + -2.0
1,417,603 - -0.2
1,417,604 - -0.3
1,417,619 + -3.8
1,417,625 - -2.4
1,417,625 - -2.9
1,417,642 + -3.7
1,417,652 + -1.7
1,417,661 + -1.2
1,417,698 - -0.9
1,417,700 - -3.1
1,417,717 - -2.9
1,417,723 + -1.1
1,417,728 + -3.2
1,417,729 - -0.5
1,417,734 + -1.7
1,417,766 + -2.2
1,417,769 + 1.0
1,417,777 - -0.7
1,417,784 - 0.4
1,417,828 + -1.4
1,417,853 + -3.1
1,417,857 - -4.1
1,417,859 - -3.0
1,417,896 + -1.5
1,417,900 - -3.2
1,418,019 + -1.7
1,418,024 - -1.0
1,418,053 - -1.4