Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6640

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1317697 to 1321815 15007 mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1322487 to 1325707 15008 mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1326359 to 1327984 15009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,321,515 + -1.3
1,321,765 + 0.0
1,322,117 - -1.8
1,322,488 - -1.1
1,322,543 - -1.0
1,322,657 + -0.8
1,322,658 - -1.2
1,322,782 - -1.0
1,322,797 + -1.7
1,322,814 + 15008 mRNA_6640 0.10 -2.9
1,322,819 - 15008 mRNA_6640 0.10 -0.1
1,322,958 - 15008 mRNA_6640 0.15 0.0
1,323,104 - 15008 mRNA_6640 0.19 -0.9
1,323,144 - 15008 mRNA_6640 0.20 -0.1
1,323,256 - 15008 mRNA_6640 0.24 -0.6
1,323,366 + 15008 mRNA_6640 0.27 0.4
1,323,403 - 15008 mRNA_6640 0.28 -2.2
1,323,406 + 15008 mRNA_6640 0.29 -0.7
1,323,469 - 15008 mRNA_6640 0.30 -1.2
1,323,564 + 15008 mRNA_6640 0.33 -1.6
1,323,586 + 15008 mRNA_6640 0.34 -0.0
1,323,849 - 15008 mRNA_6640 0.42 -1.4
1,323,920 + 15008 mRNA_6640 0.44 -1.2
1,324,261 - 15008 mRNA_6640 0.55 -0.4
1,324,492 + 15008 mRNA_6640 0.62 -2.8
1,324,584 - 15008 mRNA_6640 0.65 -2.7
1,324,912 + 15008 mRNA_6640 0.75 -0.6
1,325,085 - 15008 mRNA_6640 0.81 -1.7
1,325,090 + 15008 mRNA_6640 0.81 -1.3
1,325,172 + 15008 mRNA_6640 0.83 -1.6
1,325,177 + 15008 mRNA_6640 0.84 -2.6
1,325,193 - 15008 mRNA_6640 0.84 -0.6
1,325,380 - 15008 mRNA_6640 0.90 -0.4
1,325,445 + 0.1
1,325,469 - 0.5
1,325,606 - -1.6
1,325,636 - -3.1
1,325,652 - -2.8
1,325,918 - -2.8
1,325,920 + 1.0
1,325,939 + -0.9
1,325,949 - -1.8
1,326,098 + -1.0
1,326,119 - -1.1
1,326,227 - -1.0
1,326,255 + -0.5
1,326,518 - 0.7