Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6635

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6634: 15002 - K02734 PSMB2 20S proteasome subunit beta 4, at 1300925 to 1301957 15002 mRNA_6635: 15003 - HMMPfam-Peptidase family M48-PF01435, at 1302314 to 1305791 15003 mRNA_6636: 15004 - K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3, at 1305979 to 1309273 15004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,301,982 + -2.1
1,301,983 - 0.5
1,301,988 + -1.3
1,302,000 - -3.1
1,302,010 + -1.9
1,302,112 - 0.3
1,302,128 - -2.8
1,302,130 - -1.1
1,302,554 + -1.5
1,302,572 - 0.6
1,302,583 - -0.9
1,302,731 - 15003 mRNA_6635 0.12 -1.1
1,302,740 + 15003 mRNA_6635 0.12 -0.6
1,302,895 + 15003 mRNA_6635 0.17 -0.5
1,303,018 - 15003 mRNA_6635 0.20 -2.4
1,303,162 + 15003 mRNA_6635 0.24 -1.1
1,303,476 - 15003 mRNA_6635 0.33 -2.1
1,303,876 + 15003 mRNA_6635 0.45 -1.2
1,303,877 - 15003 mRNA_6635 0.45 1.8
1,304,272 - 15003 mRNA_6635 0.56 -0.7
1,304,473 - 15003 mRNA_6635 0.62 -2.9
1,304,678 + 15003 mRNA_6635 0.68 -2.6
1,304,747 + 15003 mRNA_6635 0.70 -1.3
1,304,842 - 15003 mRNA_6635 0.73 -3.1
1,304,922 + 15003 mRNA_6635 0.75 0.0
1,305,056 - 15003 mRNA_6635 0.79 1.2
1,305,376 + 15003 mRNA_6635 0.88 -0.5
1,305,645 - -1.3
1,305,650 + -1.0
1,305,651 + -1.8
1,305,797 + -0.4
1,305,828 + -1.2