Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6633

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6632: 15000 - BLAST histone-lysine N-methyltransferase SUV420H [Rhodo..., at 1294779 to 1296409 15000 mRNA_6633: 15001 - KOG1114 Tripeptidyl peptidase II, at 1296721 to 1300268 15001 mRNA_6634: 15002 - K02734 PSMB2 20S proteasome subunit beta 4, at 1300925 to 1301957 15002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,296,009 + 15000 mRNA_6632 0.75 -4.0
1,296,147 - 15000 mRNA_6632 0.84 -2.3
1,296,251 - -1.9
1,296,306 + 0.4
1,296,385 + -2.7
1,296,386 - -2.7
1,296,416 - -0.4
1,296,630 - -0.9
1,296,631 + -1.6
1,296,636 + -1.1
1,296,773 - -0.9
1,296,890 + -3.4
1,296,967 - -3.8
1,296,974 + -1.0
1,297,468 + 15001 mRNA_6633 0.21 -3.3
1,297,578 - 15001 mRNA_6633 0.24 -0.9
1,297,731 + 15001 mRNA_6633 0.28 -1.5
1,297,737 + 15001 mRNA_6633 0.29 -3.9
1,297,760 + 15001 mRNA_6633 0.29 0.5
1,297,778 + 15001 mRNA_6633 0.30 1.0
1,297,888 - 15001 mRNA_6633 0.33 1.0
1,297,897 - 15001 mRNA_6633 0.33 -1.0
1,297,987 - 15001 mRNA_6633 0.36 -1.4
1,298,168 - 15001 mRNA_6633 0.41 -0.5
1,298,172 + 15001 mRNA_6633 0.41 -0.7
1,298,612 + 15001 mRNA_6633 0.53 -2.0
1,298,738 - 15001 mRNA_6633 0.57 -0.7
1,298,751 + 15001 mRNA_6633 0.57 -0.1
1,299,039 + 15001 mRNA_6633 0.65 -2.9
1,299,154 - 15001 mRNA_6633 0.69 -1.1
1,299,157 - 15001 mRNA_6633 0.69 0.2
1,300,060 - -2.4
1,300,183 - 0.5
1,300,219 + -1.9
1,300,245 + -3.1
1,300,687 + -0.5
1,300,827 + -1.3