Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6605

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6604: 14972 - K12812 UAP56, BAT1, SUB2 ATP-dependent RNA helicase UAP56/SUB2, at 1210510 to 1213080 14972 mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1213438 to 1216130 14973 mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1216222 to 1217950 14974

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,213,231 - -2.5
1,213,248 - -0.3
1,213,386 + -1.5
1,213,537 - -2.1
1,213,687 - -3.5
1,213,837 + 14973 mRNA_6605 0.15 0.4
1,213,989 - 14973 mRNA_6605 0.20 -2.9
1,214,102 + 14973 mRNA_6605 0.25 -0.6
1,214,116 + 14973 mRNA_6605 0.25 -2.7
1,214,118 + 14973 mRNA_6605 0.25 -1.4
1,214,474 - 14973 mRNA_6605 0.38 -3.1
1,214,503 - 14973 mRNA_6605 0.40 -0.9
1,214,515 - 14973 mRNA_6605 0.40 -0.2
1,214,560 + 14973 mRNA_6605 0.42 -0.4
1,215,194 + 14973 mRNA_6605 0.65 -4.0
1,215,592 + 14973 mRNA_6605 0.80 -0.1
1,216,168 + -0.7
1,216,783 + 14974 mRNA_6606 0.32 -1.2
1,216,794 + 14974 mRNA_6606 0.33 -1.6
1,216,805 - 14974 mRNA_6606 0.34 0.0
1,216,825 - 14974 mRNA_6606 0.35 -1.4
1,216,880 - 14974 mRNA_6606 0.38 -1.0
1,217,099 - 14974 mRNA_6606 0.51 -0.8