Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6597

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6596: 14964 - K02898 RP-L26e, RPL26 large subunit ribosomal protein L26e, at 1188722 to 1189902 14964 mRNA_6597: 14965 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 1190168 to 1192738 14965 mRNA_6598: 14966 - K11518 TOM40 mitochondrial import receptor subunit TOM40, at 1192910 to 1194373 14966

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,190,068 + -3.0
1,190,112 - -1.6
1,190,206 + -0.8
1,190,219 - -0.4
1,190,238 + -1.5
1,190,258 + -0.7
1,190,366 + -1.6
1,190,369 - -3.1
1,190,405 - -2.9
1,190,497 - 14965 mRNA_6597 0.13 -0.8
1,190,517 - 14965 mRNA_6597 0.14 -1.3
1,190,518 - 14965 mRNA_6597 0.14 -1.4
1,190,784 + 14965 mRNA_6597 0.24 -1.0
1,191,260 + 14965 mRNA_6597 0.42 -2.6
1,191,548 - 14965 mRNA_6597 0.54 -0.7
1,191,681 - 14965 mRNA_6597 0.59 -0.1
1,192,001 - 14965 mRNA_6597 0.71 -1.0
1,192,122 + 14965 mRNA_6597 0.76 -1.7
1,192,149 - 14965 mRNA_6597 0.77 -0.4
1,192,279 - 14965 mRNA_6597 0.82 -1.6
1,192,292 + 14965 mRNA_6597 0.83 -0.8
1,192,293 - 14965 mRNA_6597 0.83 -1.9
1,192,566 + -1.7
1,192,879 - -1.5
1,192,880 + -1.7