Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6592

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1172808 to 1176820 14959 mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1177177 to 1181389 14960 mRNA_6593: 14961 - KOG1616 Protein involved in Snf1 protein kinase complex assembly, at 1181934 to 1184760 14961

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,176,179 - 14959 mRNA_6591 0.84 -1.8
1,176,217 - 14959 mRNA_6591 0.85 -0.7
1,176,304 + 14959 mRNA_6591 0.87 0.0
1,176,336 - 14959 mRNA_6591 0.88 -0.2
1,176,344 - 14959 mRNA_6591 0.88 -0.7
1,176,366 + 14959 mRNA_6591 0.89 -2.0
1,176,373 - 14959 mRNA_6591 0.89 -0.8
1,176,528 + -1.9
1,176,671 - -0.4
1,176,842 + -1.0
1,176,979 + -1.7
1,177,099 - -0.5
1,177,114 - 0.3
1,177,114 - -1.0
1,177,115 + 0.1
1,177,126 + -0.7
1,177,129 - -0.5
1,177,281 - -0.3
1,177,283 + 0.2
1,177,304 - -1.9
1,177,308 - -0.8
1,177,330 - 0.4
1,177,558 + -2.1
1,177,592 + -0.7
1,178,362 + 14960 mRNA_6592 0.28 -3.1
1,178,632 - 14960 mRNA_6592 0.35 -2.2
1,178,638 + 14960 mRNA_6592 0.35 -1.2
1,179,106 - 14960 mRNA_6592 0.46 -2.1
1,179,238 + 14960 mRNA_6592 0.49 -1.8
1,179,241 - 14960 mRNA_6592 0.49 -2.1
1,179,334 + 14960 mRNA_6592 0.51 -1.6
1,179,499 - 14960 mRNA_6592 0.55 -3.2
1,179,626 - 14960 mRNA_6592 0.58 -1.3
1,179,633 + 14960 mRNA_6592 0.58 -0.5
1,179,834 - 14960 mRNA_6592 0.63 -1.7
1,180,058 - 14960 mRNA_6592 0.68 -1.2
1,180,268 + 14960 mRNA_6592 0.73 -1.9
1,180,478 + 14960 mRNA_6592 0.78 -0.3
1,180,648 - 14960 mRNA_6592 0.82 -1.8
1,180,648 - 14960 mRNA_6592 0.82 -3.3
1,180,658 + 14960 mRNA_6592 0.83 -1.1
1,180,660 + 14960 mRNA_6592 0.83 -1.9
1,181,418 + -1.4
1,181,529 + 0.5
1,181,571 + -1.5
1,181,653 - -1.3
1,181,693 + -2.0
1,181,699 - -1.5
1,181,708 + -2.5