Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6591

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1171853 to 1172203 14958 mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1172808 to 1176820 14959 mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1177177 to 1181389 14960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,172,116 + 14958 mRNA_6590 0.75 0.2
1,172,517 + -0.6
1,172,537 + -0.1
1,172,570 - 0.8
1,172,656 - 0.1
1,172,662 + 1.4
1,172,668 - -0.7
1,172,675 - -1.6
1,172,680 + 1.0
1,172,835 + -2.8
1,172,853 + -1.9
1,173,005 - -0.2
1,173,022 + -2.1
1,173,289 - 14959 mRNA_6591 0.12 -0.7
1,173,411 - 14959 mRNA_6591 0.15 -2.6
1,173,596 + 14959 mRNA_6591 0.20 -2.1
1,174,033 + 14959 mRNA_6591 0.31 1.0
1,174,144 - 14959 mRNA_6591 0.33 0.2
1,174,408 - 14959 mRNA_6591 0.40 -0.4
1,174,412 + 14959 mRNA_6591 0.40 -0.4
1,174,935 + 14959 mRNA_6591 0.53 -3.3
1,175,152 - 14959 mRNA_6591 0.58 -2.4
1,175,200 - 14959 mRNA_6591 0.60 -2.9
1,175,363 + 14959 mRNA_6591 0.64 -0.6
1,175,495 + 14959 mRNA_6591 0.67 -0.9
1,175,501 + 14959 mRNA_6591 0.67 -3.4
1,175,733 - 14959 mRNA_6591 0.73 -0.0
1,175,781 - 14959 mRNA_6591 0.74 -2.5
1,175,790 + 14959 mRNA_6591 0.74 -0.3
1,175,911 - 14959 mRNA_6591 0.77 -1.6
1,176,059 + 14959 mRNA_6591 0.81 -0.8
1,176,110 - 14959 mRNA_6591 0.82 -1.5
1,176,179 - 14959 mRNA_6591 0.84 -1.8
1,176,217 - 14959 mRNA_6591 0.85 -0.7
1,176,304 + 14959 mRNA_6591 0.87 0.0
1,176,336 - 14959 mRNA_6591 0.88 -0.2
1,176,344 - 14959 mRNA_6591 0.88 -0.7
1,176,366 + 14959 mRNA_6591 0.89 -2.0
1,176,373 - 14959 mRNA_6591 0.89 -0.8
1,176,528 + -1.9
1,176,671 - -0.4
1,176,842 + -1.0
1,176,979 + -1.7
1,177,099 - -0.5
1,177,114 - 0.3
1,177,114 - -1.0
1,177,115 + 0.1
1,177,126 + -0.7
1,177,129 - -0.5
1,177,281 - -0.3
1,177,283 + 0.2
1,177,304 - -1.9
1,177,308 - -0.8
1,177,330 - 0.4
1,177,558 + -2.1
1,177,592 + -0.7