Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6559

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1090620 to 1093721 14926 mRNA_6559: 14927 - Hypothetical Protein, at 1093766 to 1094365 14927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,093,449 + -2.2
1,093,712 + -0.2
1,093,733 - -3.8
1,093,876 + 14927 mRNA_6559 0.18 -1.4
1,093,893 - 14927 mRNA_6559 0.21 -1.8
1,094,007 + 14927 mRNA_6559 0.40 -1.0
1,094,008 - 14927 mRNA_6559 0.40 0.3
1,094,009 + 14927 mRNA_6559 0.41 1.7
1,094,031 + 14927 mRNA_6559 0.44 0.1
1,094,038 - 14927 mRNA_6559 0.45 -3.3
1,094,039 + 14927 mRNA_6559 0.46 -3.8
1,094,041 + 14927 mRNA_6559 0.46 0.5
1,094,042 - 14927 mRNA_6559 0.46 -3.4
1,094,043 - 14927 mRNA_6559 0.46 -0.2
1,094,047 + 14927 mRNA_6559 0.47 1.3
1,094,048 - 14927 mRNA_6559 0.47 -3.4
1,094,052 - 14927 mRNA_6559 0.48 -1.3
1,094,052 + 14927 mRNA_6559 0.48 -3.8
1,094,052 - 14927 mRNA_6559 0.48 -0.8
1,094,058 + 14927 mRNA_6559 0.49 -2.3
1,094,062 - 14927 mRNA_6559 0.49 0.2
1,094,071 + 14927 mRNA_6559 0.51 0.0
1,094,073 + 14927 mRNA_6559 0.51 -0.9
1,094,082 + 14927 mRNA_6559 0.53 -0.3
1,094,094 - 14927 mRNA_6559 0.55 -0.8
1,094,094 + 14927 mRNA_6559 0.55 1.2
1,094,100 + 14927 mRNA_6559 0.56 -1.6
1,094,128 - 14927 mRNA_6559 0.60 -1.3
1,094,144 + 14927 mRNA_6559 0.63 -1.9
1,094,175 - 14927 mRNA_6559 0.68 -0.8
1,094,192 + 14927 mRNA_6559 0.71 1.5
1,094,192 + 14927 mRNA_6559 0.71 -2.9
1,094,197 - 14927 mRNA_6559 0.72 -0.1
1,094,197 - 14927 mRNA_6559 0.72 0.2
1,094,218 - 14927 mRNA_6559 0.75 -0.7
1,094,224 - 14927 mRNA_6559 0.76 -1.3
1,094,226 - 14927 mRNA_6559 0.77 -3.4
1,094,267 + 14927 mRNA_6559 0.83 -2.0
1,094,327 - -1.3
1,094,334 - -1.5
1,094,344 + -2.9
1,094,346 - 0.5
1,094,346 - 0.1
1,094,346 + -0.8
1,094,354 - -2.3
1,094,359 - -3.4
1,094,371 - -2.6
1,094,380 - -1.7
1,094,383 - -2.4
1,094,389 + -1.1
1,094,393 - -1.6
1,094,395 + -0.5
1,094,412 + -2.2
1,094,422 + 1.9
1,094,463 + -2.6
1,094,494 + -0.8
1,094,497 - -0.8
1,094,518 - -0.7
1,094,532 - 1.0
1,094,533 + 0.2
1,094,561 + 0.1
1,094,569 + -2.2
1,094,572 - -0.1
1,094,601 + -1.2
1,094,628 - -2.5
1,094,634 + 0.5
1,094,641 + 0.9
1,094,655 - -1.3
1,094,733 - -1.5
1,094,776 - -2.0
1,094,788 - -0.7
1,094,804 + -2.4
1,094,805 + -2.1
1,094,812 + -2.4
1,094,851 + -0.1
1,094,935 + -1.5
1,095,046 + -2.3
1,095,046 + -2.7
1,095,232 + -0.8