Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6557

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6556: 14924 - K14793 RRP9 ribosomal RNA-processing protein 9, at 1086461 to 1088538 14924 mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1088789 to 1090275 14925 mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1090620 to 1093721 14926

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,088,605 + -0.1
1,088,611 - -0.7
1,088,871 - -0.9
1,088,893 - -2.2
1,088,893 + 0.8
1,088,895 + -1.7
1,088,896 - -0.4
1,088,922 + -1.4
1,088,922 + -1.0
1,088,923 - 0.8
1,089,034 - 14925 mRNA_6557 0.16 -0.3
1,089,188 - 14925 mRNA_6557 0.27 -2.6
1,089,473 + 14925 mRNA_6557 0.46 -1.9
1,089,638 - 14925 mRNA_6557 0.57 -2.5
1,089,638 - 14925 mRNA_6557 0.57 -2.5
1,089,873 - 14925 mRNA_6557 0.73 -1.4
1,089,929 - 14925 mRNA_6557 0.77 -1.1
1,089,937 + 14925 mRNA_6557 0.77 -1.7
1,090,068 + 14925 mRNA_6557 0.86 -1.5
1,090,077 + 14925 mRNA_6557 0.87 -2.3
1,090,080 - 14925 mRNA_6557 0.87 -1.4
1,090,092 - 14925 mRNA_6557 0.88 -0.8
1,090,094 + 14925 mRNA_6557 0.88 -1.1
1,090,201 + -0.1
1,090,230 - 0.2
1,090,367 - -0.5
1,090,368 - -0.4
1,090,376 - -1.4
1,090,393 - 0.1
1,090,406 - -3.1
1,090,519 + -1.4
1,090,533 + 0.2
1,090,673 + -1.6
1,090,795 - -0.8
1,090,838 - -1.3
1,090,970 - 14926 mRNA_6558 0.11 -2.3
1,091,112 + 14926 mRNA_6558 0.16 -1.6
1,091,201 - 14926 mRNA_6558 0.19 -3.5
1,091,233 + 14926 mRNA_6558 0.20 -0.3