Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6549

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1055237 to 1061964 14916 mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1062959 to 1066157 14917 mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1066227 to 1069568 14918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,062,022 - 1.2
1,062,097 - -2.4
1,062,161 - -1.2
1,062,172 + -0.1
1,062,602 + -1.9
1,062,730 + -0.4
1,062,878 - -1.1
1,062,890 - -0.8
1,062,926 - -1.9
1,063,578 + 14917 mRNA_6549 0.19 0.7
1,063,637 - 14917 mRNA_6549 0.21 -3.6
1,063,771 - 14917 mRNA_6549 0.25 -2.9
1,063,787 + 14917 mRNA_6549 0.26 -1.2
1,063,848 + 14917 mRNA_6549 0.28 -1.9
1,064,035 - 14917 mRNA_6549 0.34 -1.7
1,064,194 + 14917 mRNA_6549 0.39 -1.3
1,064,431 - 14917 mRNA_6549 0.46 -1.2
1,064,667 - 14917 mRNA_6549 0.53 -1.9
1,064,771 + 14917 mRNA_6549 0.57 -0.5
1,064,997 - 14917 mRNA_6549 0.64 -2.3
1,065,016 - 14917 mRNA_6549 0.64 -2.7
1,065,136 + 14917 mRNA_6549 0.68 0.2
1,065,277 - 14917 mRNA_6549 0.72 -4.2
1,065,346 + 14917 mRNA_6549 0.75 -1.4
1,065,373 + 14917 mRNA_6549 0.75 -1.6
1,065,405 - 14917 mRNA_6549 0.76 -0.6
1,065,498 - 14917 mRNA_6549 0.79 -0.2
1,065,529 + 14917 mRNA_6549 0.80 -0.1
1,065,622 + 14917 mRNA_6549 0.83 -1.8
1,065,672 + 14917 mRNA_6549 0.85 -0.8
1,065,824 + 14917 mRNA_6549 0.90 -3.1
1,066,065 + -0.1
1,066,076 - -1.5
1,066,131 + -0.4
1,066,303 - -0.7