Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6491

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911663 to 912456 14858 mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912748 to 918213 14859 mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918835 to 919868 14860

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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912,405 + -1.5
912,748 - -1.2
912,750 + -0.1
912,759 + -1.7
912,890 + 0.3
913,187 - -0.9
913,188 + 1.0
913,344 - 14859 mRNA_6491 0.11 -0.4
913,357 - 14859 mRNA_6491 0.11 0.6
913,454 + 14859 mRNA_6491 0.13 -0.5
913,598 + 14859 mRNA_6491 0.16 -0.1
913,720 + 14859 mRNA_6491 0.18 -3.2
913,758 - 14859 mRNA_6491 0.18 -1.3
913,911 + 14859 mRNA_6491 0.21 -2.7
913,924 - 14859 mRNA_6491 0.22 -1.7
913,928 + 14859 mRNA_6491 0.22 -4.5
913,944 + 14859 mRNA_6491 0.22 0.1
914,148 + 14859 mRNA_6491 0.26 -3.6
914,379 + 14859 mRNA_6491 0.30 -0.4
914,447 + 14859 mRNA_6491 0.31 -1.3
914,489 + 14859 mRNA_6491 0.32 -1.2
914,854 + 14859 mRNA_6491 0.39 -2.1
915,176 - 14859 mRNA_6491 0.44 -3.0
915,321 + 14859 mRNA_6491 0.47 -1.9
915,411 - 14859 mRNA_6491 0.49 0.0
915,423 - 14859 mRNA_6491 0.49 -1.5
915,684 + 14859 mRNA_6491 0.54 0.6
916,221 + 14859 mRNA_6491 0.64 -1.9
916,360 - 14859 mRNA_6491 0.66 -2.0
916,509 - 14859 mRNA_6491 0.69 -0.6
916,561 + 14859 mRNA_6491 0.70 0.3
916,763 - 14859 mRNA_6491 0.73 -3.3
916,804 + 14859 mRNA_6491 0.74 -2.3
917,070 - 14859 mRNA_6491 0.79 -2.4
917,112 - 14859 mRNA_6491 0.80 -2.3
917,538 - 14859 mRNA_6491 0.88 -1.8
917,550 + 14859 mRNA_6491 0.88 -1.4
918,114 - -1.3
918,383 - -2.7
918,390 + -3.8
918,419 + -0.6
918,420 + 0.3
918,439 - 0.9
918,439 + -1.1
918,582 - -1.6
918,583 - -1.9
918,586 + -2.0
919,005 - 14860 mRNA_6492 0.16 -1.0
919,023 + 14860 mRNA_6492 0.18 -1.4