Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6487

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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901,588 + 14854 mRNA_6486 0.86 -1.1
901,936 - -1.5
901,961 - -0.3
901,962 + -1.3
901,963 - -1.8
901,967 + -1.0
901,986 + -2.5
901,989 + -0.5
901,997 - -0.7
902,020 + -2.4
902,095 - -0.2
902,104 + -0.7
902,129 - -0.8
902,134 + 1.3
902,143 - -1.6
902,157 + -1.9
902,161 + -1.2
902,178 - -2.1
902,252 - -1.7
902,279 - 1.4
902,291 + -2.9
902,298 - -1.0
902,308 + -0.6
902,364 - -1.7
902,364 + -1.8
902,415 + -0.5
902,428 - -2.1
902,572 - 0.8
902,579 - -1.3
902,594 - -3.0
902,643 + -1.8
902,884 + 14855 mRNA_6487 0.13 -1.3
903,001 - 14855 mRNA_6487 0.19 -1.0
903,062 + 14855 mRNA_6487 0.21 -1.0
903,265 + 14855 mRNA_6487 0.30 -0.1
903,743 + 14855 mRNA_6487 0.52 -2.1
903,866 + 14855 mRNA_6487 0.57 -0.1
903,893 - 14855 mRNA_6487 0.59 -1.7
903,981 - 14855 mRNA_6487 0.63 0.1
904,618 + -0.0
904,857 - -0.7
904,883 - -0.3
904,883 - -0.0
904,897 - -1.4
904,899 + 0.2
904,899 - 0.4
904,922 - -3.1
904,923 + -0.9
904,994 + 1.5
904,998 - -0.4
905,047 - -1.8
905,050 + -1.0
905,059 + -0.3
905,073 - 0.2
905,075 - -4.1
905,089 - -3.3
905,091 - -0.8
905,092 + 0.7
905,093 + -1.2
905,110 - -1.2
905,408 - -2.3
905,562 + 14856 mRNA_6488 0.16 -0.6