Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6455

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828916 to 829758 14822 mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829918 to 832599 14823 mRNA_6456: 14824 - KOG3386 Copper transporter, at 832963 to 833757 14824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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828,994 + -3.5
828,994 + -2.0
828,995 - -3.3
829,594 + 14822 mRNA_6454 0.80 -2.3
829,721 - -1.2
829,722 + -0.6
829,987 - -4.2
830,183 - -1.2
830,866 - 14823 mRNA_6455 0.35 -2.6
830,984 - 14823 mRNA_6455 0.40 -0.7
831,071 + 14823 mRNA_6455 0.43 -3.2
831,201 + 14823 mRNA_6455 0.48 0.0
831,608 + 14823 mRNA_6455 0.63 -2.6
831,756 + 14823 mRNA_6455 0.69 -0.9
831,770 - 14823 mRNA_6455 0.69 -2.1
832,226 + 14823 mRNA_6455 0.86 -0.4
832,233 + 14823 mRNA_6455 0.86 -2.6
832,326 + 14823 mRNA_6455 0.90 -0.6
832,462 + -2.4
832,466 - -1.2
832,478 + -0.6
832,642 + -0.4
832,749 + -0.1
832,763 - -2.3
832,766 - -0.6
832,771 + -2.0
832,775 + 0.5
832,794 + -1.0
832,810 - 2.4
832,949 + -2.2
832,962 + -2.0
833,533 + 14824 mRNA_6456 0.72 -0.0