Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6449

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6448: 14816 - HMMPfam-F-box-like-PF12937, at 817584 to 818438 14816 mRNA_6449: 14817 - HMMPfam-Protein of unknown function (DUF1399)-PF07173, at 818867 to 821319 14817 mRNA_6450: 14818 - Hypothetical Protein, at 821969 to 822682 14818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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818,305 + 14816 mRNA_6448 0.84 0.7
818,492 - -0.6
818,538 - -2.5
818,651 + -0.3
818,790 - -0.5
818,859 - -0.6
818,917 - -1.2
819,025 + -2.6
819,050 + -3.1
819,184 - 14817 mRNA_6449 0.13 -0.7
819,262 - 14817 mRNA_6449 0.16 -1.2
819,262 + 14817 mRNA_6449 0.16 -2.3
819,317 - 14817 mRNA_6449 0.18 -4.7
819,352 - 14817 mRNA_6449 0.20 -1.6
819,458 - 14817 mRNA_6449 0.24 0.1
819,748 + 14817 mRNA_6449 0.36 -1.7
819,871 + 14817 mRNA_6449 0.41 0.6
819,943 - 14817 mRNA_6449 0.44 -1.9
820,133 + 14817 mRNA_6449 0.52 0.3
820,199 - 14817 mRNA_6449 0.54 -1.4
820,330 - 14817 mRNA_6449 0.60 -2.9
820,441 + 14817 mRNA_6449 0.64 -0.2
820,459 - 14817 mRNA_6449 0.65 -1.1
820,469 + 14817 mRNA_6449 0.65 0.1
820,480 + 14817 mRNA_6449 0.66 -0.0
820,524 - 14817 mRNA_6449 0.68 -3.0
821,069 - 14817 mRNA_6449 0.90 -1.3
821,090 - -1.7
821,099 + -0.6
821,835 + -2.8
821,884 - -0.4
821,928 - -2.6
821,984 + -0.9
822,261 + 14818 mRNA_6450 0.41 -1.3