Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6428

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6427: 14795 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 773204 to 778326 14795 mRNA_6428: 14796 - KOG2208 Vigilin, at 779181 to 783068 14796

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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778,240 + -1.7
778,263 + -1.7
778,290 + 0.8
778,647 - -0.5
778,742 + -2.2
778,785 + -2.7
778,861 + -3.3
778,883 - -0.0
778,883 - -0.5
778,909 - -3.6
778,913 + -0.8
779,053 - -3.9
779,541 + -2.5
779,809 + 14796 mRNA_6428 0.16 -3.7
780,038 + 14796 mRNA_6428 0.22 -1.4
780,040 - 14796 mRNA_6428 0.22 -0.1
780,156 - 14796 mRNA_6428 0.25 -3.3
780,248 - 14796 mRNA_6428 0.27 -1.4
780,273 + 14796 mRNA_6428 0.28 -0.1
780,389 - 14796 mRNA_6428 0.31 -1.8
780,422 + 14796 mRNA_6428 0.32 1.0
780,499 - 14796 mRNA_6428 0.34 -1.3
780,654 - 14796 mRNA_6428 0.38 -0.8
780,666 - 14796 mRNA_6428 0.38 -2.6
780,945 - 14796 mRNA_6428 0.45 -1.9
781,097 - 14796 mRNA_6428 0.49 -0.1
781,104 + 14796 mRNA_6428 0.49 -1.3
781,126 + 14796 mRNA_6428 0.50 -1.4
781,245 + 14796 mRNA_6428 0.53 -3.0
781,261 + 14796 mRNA_6428 0.53 1.4
781,261 + 14796 mRNA_6428 0.53 -3.1
781,443 + 14796 mRNA_6428 0.58 -3.5
781,536 + 14796 mRNA_6428 0.61 -0.7
781,548 + 14796 mRNA_6428 0.61 -1.2
781,567 - 14796 mRNA_6428 0.61 -3.9
781,573 + 14796 mRNA_6428 0.62 -3.3
781,606 + 14796 mRNA_6428 0.62 -3.0
781,661 - 14796 mRNA_6428 0.64 -1.6
781,701 - 14796 mRNA_6428 0.65 -3.7
781,795 - 14796 mRNA_6428 0.67 -3.7
781,888 + 14796 mRNA_6428 0.70 -2.2
782,021 - 14796 mRNA_6428 0.73 -2.0
782,024 + 14796 mRNA_6428 0.73 -1.9
782,143 + 14796 mRNA_6428 0.76 -0.5
782,268 - 14796 mRNA_6428 0.79 -0.6
782,387 + 14796 mRNA_6428 0.82 -2.8
782,389 - 14796 mRNA_6428 0.83 -2.8
782,428 - 14796 mRNA_6428 0.84 0.6
783,050 - -0.5
783,168 - 0.2
783,195 - -2.9
783,295 - -0.3
783,483 - -3.4
783,489 + 0.4
783,500 + -1.0
783,601 - -0.2
783,618 + 0.5
783,628 + -0.4
783,630 - -1.4
783,632 - -1.1
783,639 + -2.9
783,640 + -0.3
783,647 + -0.8
783,664 + -1.8
783,664 + -0.3
783,674 + 0.0
783,676 - -1.0
783,679 + -2.7
783,701 + -1.5
783,777 - -3.5
783,812 - -0.1
783,924 - -1.0
783,947 - -1.6
783,949 - -0.7
783,954 + -0.0
783,979 + -1.6
783,988 - -2.0
784,012 - -2.4
784,055 + -1.7